Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050921.1 | PORPHOBILINOGEN DEAMINASE |
| CAI8050923.1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| CAI8050922.1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| CAI8050924.1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| CAI8050925.1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| CAI8050926.1 | |
| CAI8050927.1 | DESMOGLEIN FAMILY MEMBER |
| CAI8050928.1 | FAT ATYPICAL CADHERIN-RELATED |
| CAI8050931.1 | CALSYNTENIN |
| CAI8050930.1 | CALSYNTENIN |
| CAI8050929.1 | CALSYNTENIN |
| CAI8050932.1 | DYNEIN HEAVY CHAIN FAMILY PROTEIN |
| CAI8050935.1 | BTB POZ DOMAIN CONTAINING 12 |
| CAI8050933.1 | HSC70-INTERACTING PROTEIN |
| CAI8050934.1 | BTB POZ DOMAIN CONTAINING 12 |
| CAI8050936.1 | BTB POZ DOMAIN CONTAINING 12 |
| CAI8050937.1 | |
| CAI8050938.1 | |
| CAI8050945.1 | |
| CAI8050944.1 | |
| CAI8050943.1 | SH3 DOMAIN-CONTAINING |
| CAI8050942.1 | SH3 DOMAIN-CONTAINING |
| CAI8050941.1 | FCH AND DOUBLE SH3 DOMAINS PROTEIN |
| CAI8050940.1 | JAK PATHWAY SIGNAL TRANSDUCTION ADAPTOR MOLECULE |
| CAI8050939.1 | |
| CAI8050946.1 | 40S RIBOSOMAL PROTEIN S3A |
| CAI8050947.1 | ADENYLATE CYCLASE TYPE 1 |
| CAI8050949.1 | |
| CAI8050948.1 | |
| CAI8050951.1 | |
| CAI8050950.1 | |
| CAI8050952.1 | |
| CAI8050953.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8050954.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8050955.1 | |
| CAI8050956.1 | |
| CAI8050958.1 | |
| CAI8050957.1 | |
| CAI8050959.1 | |
| CAI8050960.1 | |
| CAI8050961.1 | |
| CAI8050962.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8050963.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8050966.1 | WD REPEAT DOMAIN-RELATED |
| CAI8050970.1 | WD REPEAT DOMAIN-RELATED |
| CAI8050969.1 | WD REPEAT DOMAIN-RELATED |
| CAI8050967.1 | |
| CAI8050971.1 | WD REPEAT DOMAIN-RELATED |
| CAI8050968.1 | |
| CAI8050972.1 |
