Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050621.1 | |
| CAI8050622.1 | CHONDROITIN SYNTHASE |
| CAI8050623.1 | |
| CAI8050627.1 | PF6 |
| CAI8050626.1 | PF6 |
| CAI8050625.1 | PF6 |
| CAI8050624.1 | PF6 |
| CAI8050628.1 | |
| CAI8050629.1 | RFX TRANSCRIPTION FACTOR FAMILY |
| CAI8050630.1 | TUBULIN POLYGLUTAMYLASE |
| CAI8050633.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 25 |
| CAI8050634.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 25 |
| CAI8050632.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 25 |
| CAI8050631.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 25 |
| CAI8050635.1 | DNAJ HOMOLOG SUBFAMILY C MEMBER 25 |
| CAI8050642.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8050640.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8050641.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8050638.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8050639.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8050637.1 | |
| CAI8050636.1 | |
| CAI8050643.1 | ATP-DEPENDENT RNA HELICASE RHLE-RELATED |
| CAI8050647.1 | |
| CAI8050646.1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
| CAI8050645.1 | PALMITOYL-PROTEIN THIOESTERASE/DOLICHYLDIPHOSPHATASE 1 |
| CAI8050644.1 | |
| CAI8050648.1 | |
| CAI8050653.1 | CNH DOMAIN CONTAINING |
| CAI8050652.1 | CNH DOMAIN CONTAINING |
| CAI8050651.1 | CNH DOMAIN CONTAINING |
| CAI8050650.1 | CNH DOMAIN CONTAINING |
| CAI8050649.1 | CNH DOMAIN CONTAINING |
| CAI8050654.1 | CNH DOMAIN CONTAINING |
| CAI8050655.1 | CNH DOMAIN CONTAINING |
| CAI8050656.1 | CNH DOMAIN CONTAINING |
| CAI8050658.1 | OS05G0143600 PROTEIN |
| CAI8050657.1 | |
| CAI8050660.1 | PDZ DOMAIN CONTAINING PROTEIN |
| CAI8050659.1 | ADENYLATE CYCLASE TYPE 1 |
| CAI8050663.1 | AUTOPHAGY PROTEIN 5 |
| CAI8050664.1 | AUTOPHAGY PROTEIN 5 |
| CAI8050662.1 | AUTOPHAGY PROTEIN 5 |
| CAI8050666.1 | AUTOPHAGY PROTEIN 5 |
| CAI8050665.1 | |
| CAI8050661.1 | ADENOSINE KINASE |
| CAI8050668.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8050669.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8050667.1 | |
| CAI8050670.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
