Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050319.1 | INTEGRIN BETA SUBUNIT |
| CAI8050317.1 | INTEGRIN BETA SUBUNIT |
| CAI8050318.1 | INTEGRIN BETA SUBUNIT |
| CAI8050316.1 | INTEGRIN BETA SUBUNIT |
| CAI8050315.1 | INTEGRIN BETA SUBUNIT |
| CAI8050326.1 | |
| CAI8050327.1 | |
| CAI8050328.1 | |
| CAI8050330.1 | WNT RELATED |
| CAI8050329.1 | WNT RELATED |
| CAI8050331.1 | WNT RELATED |
| CAI8050332.1 | |
| CAI8050334.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8050333.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8050335.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8050337.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8050336.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8050338.1 | |
| CAI8050339.1 | 2-OXOGLUTARATE (2OG) AND FE(II)-DEPENDENT OXYGENASE SUPERFAMILY PROTEIN-RELATED |
| CAI8050342.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8050343.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8050341.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8050344.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8050345.1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| CAI8050346.1 | |
| CAI8050340.1 | |
| CAI8050350.1 | CYTOKINE RECEPTOR |
| CAI8050348.1 | CYTOKINE RECEPTOR |
| CAI8050349.1 | CYTOKINE RECEPTOR |
| CAI8050347.1 | CYTOKINE RECEPTOR |
| CAI8050351.1 | |
| CAI8050352.1 | CYTOKINE RECEPTOR |
| CAI8050358.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050357.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050356.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050355.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050354.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050353.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050359.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8050360.1 | |
| CAI8050361.1 | |
| CAI8050362.1 | |
| CAI8050363.1 | |
| CAI8050364.1 | |
| CAI8050365.1 | |
| CAI8050366.1 | |
| CAI8050367.1 | |
| CAI8050368.1 | |
| CAI8050369.1 | |
| CAI8050370.1 |
