Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050171.1 | FANCONI ANEMIA GROUP A PROTEIN |
| CAI8050172.1 | |
| CAI8050173.1 | |
| CAI8050174.1 | |
| CAI8050175.1 | DNA REPAIR PROTEIN XRCC4 |
| CAI8050177.1 | |
| CAI8050176.1 | BETA-AMYLOID BINDING PROTEIN-RELATED |
| CAI8050179.1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
| CAI8050181.1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
| CAI8050180.1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
| CAI8050178.1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
| CAI8050182.1 | E3 UBIQUITIN-PROTEIN LIGASE COP1 |
| CAI8050183.1 | KELCH PROTEIN |
| CAI8050184.1 | ANKYRIN REPEAT CONTAINING |
| CAI8050187.1 | PROTEIN ODR-4 HOMOLOG |
| CAI8050186.1 | PROTEIN ODR-4 HOMOLOG |
| CAI8050185.1 | PROTEIN ODR-4 HOMOLOG |
| CAI8050188.1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| CAI8050189.1 | PEROXIREDOXIN |
| CAI8050190.1 | PEROXIREDOXIN |
| CAI8050194.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8050193.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8050192.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8050191.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8050195.1 | TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN |
| CAI8050196.1 | |
| CAI8050197.1 | - |
| CAI8050198.1 | |
| CAI8050199.1 | |
| CAI8050200.1 | PRESEQUENCE PROTEASE |
| CAI8050204.1 | |
| CAI8050203.1 | |
| CAI8050202.1 | |
| CAI8050201.1 | |
| CAI8050205.1 | |
| CAI8050206.1 | |
| CAI8050207.1 | |
| CAI8050208.1 | |
| CAI8050209.1 | |
| CAI8050210.1 | |
| CAI8050211.1 | |
| CAI8050212.1 | |
| CAI8050215.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8050214.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8050213.1 | ANKYRIN REPEAT FAMILY A |
| CAI8050216.1 | |
| CAI8050217.1 | |
| CAI8050220.1 | |
| CAI8050219.1 | |
| CAI8050218.1 |
