Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049873.1 | MYOSIN |
| CAI8049872.1 | MYOSIN |
| CAI8049871.1 | MYOSIN |
| CAI8049870.1 | |
| CAI8049869.1 | |
| CAI8049876.1 | MYOSIN |
| CAI8049877.1 | MYOSIN |
| CAI8049878.1 | |
| CAI8049882.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8049880.1 | |
| CAI8049879.1 | |
| CAI8049883.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8049884.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8049881.1 | 3-HYDROXYACYL-COA DEHYDROGENASE FAMILY PROTEIN |
| CAI8049885.1 | |
| CAI8049886.1 | |
| CAI8049887.1 | |
| CAI8049888.1 | |
| CAI8049889.1 | |
| CAI8049890.1 | |
| CAI8049891.1 | TRAFFICKING PROTEIN PARTICLE COMPLEX SUBUNIT 3 |
| CAI8049893.1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| CAI8049892.1 | RHO GTPASE-ACTIVATING PROTEIN 190 |
| CAI8049894.1 | TESMIN/TSO1-RELATED |
| CAI8049895.1 | TESMIN/TSO1-RELATED |
| CAI8049896.1 | PROTECTION OF TELOMERES 1 |
| CAI8049897.1 | |
| CAI8049898.1 | |
| CAI8049899.1 | |
| CAI8049900.1 | |
| CAI8049901.1 | |
| CAI8049902.1 | |
| CAI8049903.1 | |
| CAI8049904.1 | MAP KINASE KINASE KINASE SSK2-RELATED-RELATED |
| CAI8049905.1 | |
| CAI8049906.1 | ALDOSE-1-EPIMERASE |
| CAI8049910.1 | ANTHRAX TOXIN RECEPTOR |
| CAI8049908.1 | |
| CAI8049909.1 | |
| CAI8049907.1 | ANTHRAX TOXIN RECEPTOR |
| CAI8049911.1 | |
| CAI8049914.1 | WD40 REPEAT DOMAIN 95 |
| CAI8049913.1 | WD40 REPEAT DOMAIN 95 |
| CAI8049912.1 | WD40 REPEAT DOMAIN 95 |
| CAI8049916.1 | |
| CAI8049915.1 | |
| CAI8049917.1 | |
| CAI8049918.1 | |
| CAI8049919.1 | |
| CAI8049925.1 | DEDICATOR OF CYTOKINESIS DOCK |
