Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049721.1 | PYRUVOYL TETRAHYDROBIOPTERIN SYNTHASE |
| CAI8049722.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8049723.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8049724.1 | AMINOPEPTIDASE |
| CAI8049725.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8049726.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8049727.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8049728.1 | |
| CAI8049729.1 | |
| CAI8049730.1 | |
| CAI8049731.1 | H REPEAT-ASSOCIATED PREDICTED TRANSPOSASE |
| CAI8049732.1 | ACID HYDRATASE |
| CAI8049733.1 | RIBOSOMAL RNA SMALL SUBUNIT METHYLTRANSFERASE I |
| CAI8049734.1 | |
| CAI8049735.1 | |
| CAI8049736.1 | NAD(P)H NITROREDUCTASE YDGI-RELATED |
| CAI8049737.1 | |
| CAI8049738.1 | NIPSNAP-RELATED |
| CAI8049739.1 | |
| CAI8049740.1 | METHYLMALONYL-COA EPIMERASE |
| CAI8049741.1 | TRANSAMIDASE |
| CAI8049742.1 | TRANSAMIDASE |
| CAI8049743.1 | HYDROLASE ALPHA/BETA FOLD FAMILY |
| CAI8049744.1 | |
| CAI8049745.1 | AMINOTRANSFERASE CLASS V |
| CAI8049746.1 | SLR1083 PROTEIN |
| CAI8049747.1 | |
| CAI8049748.1 | |
| CAI8049749.1 | |
| CAI8049750.1 | |
| CAI8049751.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049754.1 | - |
| CAI8049753.1 | - |
| CAI8049752.1 | - |
| CAI8049755.1 | - |
| CAI8049758.1 | - |
| CAI8049757.1 | - |
| CAI8049756.1 | DRAB5-RELATED |
| CAI8049759.1 | ENDOPLASMIC RETICULUM RESIDENT PROTEIN 44 |
| CAI8049761.1 | AMP DEAMINASE |
| CAI8049760.1 | AMP DEAMINASE |
| CAI8049762.1 | AMP DEAMINASE |
| CAI8049763.1 | UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 |
| CAI8049764.1 | UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 |
| CAI8049765.1 | UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 |
| CAI8049766.1 | UBIQUITIN-FOLD MODIFIER-CONJUGATING ENZYME 1 |
| CAI8049770.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8049769.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8049768.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8049767.1 |
