Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049470.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8049471.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
| CAI8049473.1 | ADENYLOSUCCINATE SYNTHETASE |
| CAI8049474.1 | DIHYDRODIPICOLINATE SYNTHASE |
| CAI8049475.1 | DEHYDROGENASE, PUTATIVE-RELATED |
| CAI8049476.1 | DIHYDRODIPICOLINATE REDUCTASE |
| CAI8049478.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8049477.1 | POLYRIBONUCLEOTIDE NUCLEOTIDYLTRANSFERASE |
| CAI8049479.1 | RIBOSOMAL PROTEIN S15, BACTERIAL AND ORGANELLAR |
| CAI8049481.1 | COATOMER SUBUNIT DELTA |
| CAI8049480.1 | COATOMER SUBUNIT DELTA |
| CAI8049482.1 | COATOMER SUBUNIT DELTA |
| CAI8049483.1 | |
| CAI8049484.1 | |
| CAI8049485.1 | |
| CAI8049486.1 | |
| CAI8049488.1 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG |
| CAI8049487.1 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG |
| CAI8049489.1 | TIAM (MAMMALIAN TUMOR INVASION AND METASTASIS FACTOR) HOMOLOG |
| CAI8049490.1 | RIBONUCLEASE |
| CAI8049491.1 | RIBONUCLEASE |
| CAI8049492.1 | |
| CAI8049493.1 | ELONGATION FACTOR TU-RELATED |
| CAI8049494.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8049495.1 | 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL |
| CAI8049497.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8049496.1 | 10 KDA HEAT SHOCK PROTEIN |
| CAI8049498.1 | PHOSPHORIBOSYLAMINOIMIDAZOLE-SUCCINOCARBOXAMIDE SYNTHASE |
| CAI8049499.1 | TRANSCRIPTIONAL REPRESSOR NRDR |
| CAI8049500.1 | FORMIMINOTRANSFERASE-CYCLODEAMINASE |
| CAI8049502.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8049501.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8049503.1 | NICOTINAMIDE-NUCLEOTIDE AMIDOHYDROLASE PNCC |
| CAI8049504.1 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
| CAI8049505.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049506.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049507.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049508.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049511.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049510.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049509.1 | GLYCEROL-3-PHOSPHATE DEHYDROGENASE |
| CAI8049512.1 | |
| CAI8049513.1 | |
| CAI8049514.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8049515.1 | |
| CAI8049516.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8049517.1 | |
| CAI8049518.1 | TRNA (GUANINE-N(1)-)-METHYLTRANSFERASE |
| CAI8049519.1 | RIBOSOMAL PROTEIN L19 |
| CAI8049520.1 |
