Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049220.1 | UNCHARACTERIZED |
| CAI8049222.1 | UNCHARACTERIZED |
| CAI8049223.1 | UNCHARACTERIZED |
| CAI8049224.1 | UNCHARACTERIZED |
| CAI8049226.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8049225.1 | KELCH PROTEIN |
| CAI8049227.1 | KELCH PROTEIN |
| CAI8049230.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049229.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049231.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049228.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049232.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049233.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049234.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049235.1 | TRANSLATIONAL ACTIVATOR GCN1-RELATED |
| CAI8049237.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8049236.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8049238.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8049239.1 | GMP SYNTHASE-RELATED |
| CAI8049240.1 | SUA5 |
| CAI8049241.1 | PHOSPHOGLYCERATE KINASE |
| CAI8049242.1 | COFACTOR-INDEPENDENT PHOSPHOGLYCERATE MUTASE |
| CAI8049244.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8049243.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8049245.1 | TRIOSEPHOSPHATE ISOMERASE |
| CAI8049246.1 | TRNA DIMETHYLALLYLTRANSFERASE |
| CAI8049249.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8049247.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8049248.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8049250.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8049251.1 | DIAMINOPIMELATE EPIMERASE, CHLOROPLASTIC |
| CAI8049252.1 | AMINO ACID AMINOTRANSFERASE |
| CAI8049253.1 | GTP-BINDING PROTEIN HFLX |
| CAI8049254.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8049255.1 | K(+)-INSENSITIVE PYROPHOSPHATE-ENERGIZED PROTON PUMP |
| CAI8049256.1 | VACUOLAR SORTING PROTEIN VPS29 |
| CAI8049257.1 | TRANSAMIDASE |
| CAI8049258.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
| CAI8049259.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE DAHP SYNTHETASE |
| CAI8049260.1 | SPERMIDINE N(1)-ACETYLTRANSFERASE |
| CAI8049261.1 | RHOMBOID PROTEASE |
| CAI8049262.1 | XANTHINE DEHYDROGENASE |
| CAI8049263.1 | |
| CAI8049264.1 | COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) |
| CAI8049265.1 | MAGNESIUM-CHELATASE SUBUNIT CHLH, CHLOROPLASTIC |
| CAI8049266.1 | |
| CAI8049267.1 | |
| CAI8049268.1 | MAGNESIUM-CHELATASE SUBUNIT CHLD, CHLOROPLASTIC |
| CAI8049269.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8049270.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
