Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049121.1 | |
| CAI8049122.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8049123.1 | JNK1/MAPK8-ASSOCIATED MEMBRANE PROTEIN |
| CAI8049124.1 | JNK1/MAPK8-ASSOCIATED MEMBRANE PROTEIN |
| CAI8049125.1 | |
| CAI8049126.1 | |
| CAI8049127.1 | |
| CAI8049130.1 | CXC2 DOMAIN-CONTAINING PROTEIN |
| CAI8049129.1 | CXC2 DOMAIN-CONTAINING PROTEIN |
| CAI8049128.1 | CXC2 DOMAIN-CONTAINING PROTEIN |
| CAI8049131.1 | |
| CAI8049132.1 | |
| CAI8049134.1 | TRANSMEMBRANE PROTEIN 206 |
| CAI8049133.1 | TRANSMEMBRANE PROTEIN 206 |
| CAI8049135.1 | TRANSMEMBRANE PROTEIN 206 |
| CAI8049136.1 | TRANSMEMBRANE PROTEIN 206 |
| CAI8049137.1 | NISCHARIN RELATED |
| CAI8049138.1 | RADICAL SAM PROTEINS |
| CAI8049141.1 | |
| CAI8049140.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
| CAI8049139.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
| CAI8049142.1 | |
| CAI8049143.1 | CYTOCHROME C OXIDASE POLYPEPTIDE VIA |
| CAI8049144.1 | |
| CAI8049145.1 | UBIQUITINATION FACTOR E4 |
| CAI8049148.1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
| CAI8049146.1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
| CAI8049147.1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
| CAI8049149.1 | DNA REPAIR/TRANSCRIPTION PROTEIN MET18/MMS19 |
| CAI8049151.1 | HISTONE RNA HAIRPIN-BINDING PROTEIN |
| CAI8049150.1 | HISTONE RNA HAIRPIN-BINDING PROTEIN |
| CAI8049152.1 | HISTONE RNA HAIRPIN-BINDING PROTEIN |
| CAI8049153.1 | TELOMERIC REPEAT-BINDING FACTOR 2 TERF2 |
| CAI8049154.1 | SORTILIN RELATED |
| CAI8049155.1 | POLYCYSTIN-1 |
| CAI8049156.1 | |
| CAI8049159.1 | PHOSPHOLIPID ACYLTRANSFERASE |
| CAI8049158.1 | PHOSPHOLIPID ACYLTRANSFERASE |
| CAI8049157.1 | PROGRAMMED CELL DEATH 4 |
| CAI8049160.1 | HOMEOBOX PROTEIN NKX |
| CAI8049164.1 | MAJOR VAULT PROTEIN |
| CAI8049163.1 | MAJOR VAULT PROTEIN |
| CAI8049162.1 | MAJOR VAULT PROTEIN |
| CAI8049161.1 | MAJOR VAULT PROTEIN |
| CAI8049167.1 | MAJOR VAULT PROTEIN |
| CAI8049166.1 | MAJOR VAULT PROTEIN |
| CAI8049165.1 | MAJOR VAULT PROTEIN |
| CAI8049168.1 | MAJOR VAULT PROTEIN |
| CAI8049169.1 | MAJOR VAULT PROTEIN |
| CAI8049170.1 | MAJOR VAULT PROTEIN |
