Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048921.1 | |
| CAI8048922.1 | |
| CAI8048925.1 | |
| CAI8048924.1 | |
| CAI8048923.1 | |
| CAI8048926.1 | |
| CAI8048928.1 | WASH COMPLEX SUBUNIT 5 |
| CAI8048927.1 | WASH COMPLEX SUBUNIT 5 |
| CAI8048930.1 | 2-IMINOBUTANOATE/2-IMINOPROPANOATE DEAMINASE RIDA |
| CAI8048929.1 | |
| CAI8048932.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8048931.1 | |
| CAI8048933.1 | SERINE/THREONINE-PROTEIN KINASE IAL-RELATED |
| CAI8048934.1 | |
| CAI8048936.1 | UBIQUITIN FUSION DEGRADATON PROTEIN 1 |
| CAI8048935.1 | |
| CAI8048937.1 | UBIQUITIN FUSION DEGRADATON PROTEIN 1 |
| CAI8048939.1 | FACT COMPLEX SUBUNIT SSRP1 |
| CAI8048938.1 | FACT COMPLEX SUBUNIT SSRP1 |
| CAI8048940.1 | FACT COMPLEX SUBUNIT SSRP1 |
| CAI8048941.1 | HISTONE H3.2 |
| CAI8048942.1 | HISTONE H3.2 |
| CAI8048943.1 | SUCCINYL-COA--D-CITRAMALATE COA-TRANSFERASE |
| CAI8048944.1 | VITAMIN K EPOXIDE REDUCTASE COMPLEX, SUBUNIT 1 |
| CAI8048948.1 | HEPATOCYTE NUCLEAR FACTOR 1 |
| CAI8048947.1 | HEPATOCYTE NUCLEAR FACTOR 1 |
| CAI8048946.1 | HEPATOCYTE NUCLEAR FACTOR 1 |
| CAI8048945.1 | HEPATOCYTE NUCLEAR FACTOR 1 |
| CAI8048951.1 | THO COMPLEX SUBUNIT 6 HOMOLOG |
| CAI8048950.1 | SYNTAXIN |
| CAI8048949.1 | SYNTAXIN |
| CAI8048953.1 | SYNTAXIN |
| CAI8048952.1 | SYNTAXIN |
| CAI8048954.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8048955.1 | PREFOLDIN SUBUNIT 1-RELATED |
| CAI8048958.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8048959.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8048957.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8048956.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8048960.1 | VESICLE PROTEIN SORTING-ASSOCIATED |
| CAI8048961.1 | SYNTAXIN |
| CAI8048963.1 | SEC31-RELATED PROTEIN |
| CAI8048964.1 | |
| CAI8048965.1 | SEC31-RELATED PROTEIN |
| CAI8048962.1 | |
| CAI8048966.1 | |
| CAI8048969.1 | |
| CAI8048968.1 | |
| CAI8048967.1 | |
| CAI8048970.1 |
