Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048771.1 | NADH-SPECIFIC METHYLGLYOXAL REDUCTASE-RELATED |
| CAI8048772.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8048773.1 | HEAT-SHOCK PROTEIN 20 FAMILY MEMBER |
| CAI8048774.1 | URIDINE KINASE |
| CAI8048775.1 | PHOSPHO-2-DEHYDRO-3-DEOXYHEPTONATE ALDOLASE |
| CAI8048776.1 | HOMOCITRATE SYNTHASE-RELATED |
| CAI8048779.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8048777.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8048778.1 | LEUCINE AMINOPEPTIDASE-RELATED |
| CAI8048780.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8048781.1 | RESPIRATORY NITRATE REDUCTASE |
| CAI8048782.1 | TRANSCRIPTIONAL ACTIVATOR PROTEIN MED |
| CAI8048783.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8048784.1 | CARBOHYDRATE TRANSPORT ATP-BINDING PROTEIN MG119-RELATED |
| CAI8048785.1 | TRANSLOCATION AND ASSEMBLY MODULE SUBUNIT TAMB |
| CAI8048786.1 | |
| CAI8048787.1 | BACTERIAL HEMOLYSIN-LIKE PROTEIN |
| CAI8048788.1 | 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED |
| CAI8048789.1 | EXODEOXYRIBONUCLEASE 7 SMALL SUBUNIT |
| CAI8048790.1 | 2',3'-CYCLIC-NUCLEOTIDE 2'-PHOSPHODIESTERASE |
| CAI8048791.1 | OROTATE PHOSPHORIBOSYLTRANSFERASE |
| CAI8048792.1 | SELENIDE, WATER DIKINASE |
| CAI8048793.1 | GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1 |
| CAI8048794.1 | |
| CAI8048795.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8048796.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8048797.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8048798.1 | |
| CAI8048799.1 | AMIDOHYDROLASE |
| CAI8048800.1 | |
| CAI8048801.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8048802.1 | ALDO/KETO REDUCTASE |
| CAI8048803.1 | ALDO/KETO REDUCTASE |
| CAI8048804.1 | FLAVIN MONOAMINE OXIDASE |
| CAI8048805.1 | FLAVIN MONOAMINE OXIDASE |
| CAI8048806.1 | FLAVIN MONOAMINE OXIDASE |
| CAI8048807.1 | |
| CAI8048808.1 | |
| CAI8048809.1 | MEMBRANE PROTEIN-RELATED |
| CAI8048810.1 | 50S RIBOSOMAL PROTEIN L31, CHLOROPLASTIC |
| CAI8048811.1 | |
| CAI8048812.1 | RIBOSOMAL PROTEIN L27 |
| CAI8048813.1 | 50S RIBOSOMAL PROTEIN L21 |
| CAI8048814.1 | TIS1421-TRANSPOSASE PROTEIN A |
| CAI8048815.1 | |
| CAI8048816.1 | ANKYRIN REPEAT CONTAINING |
| CAI8048818.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8048819.1 | |
| CAI8048821.1 | |
| CAI8048817.1 |
