Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048721.1 | |
| CAI8048722.1 | |
| CAI8048724.1 | |
| CAI8048723.1 | |
| CAI8048725.1 | |
| CAI8048730.1 | ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG |
| CAI8048727.1 | ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG |
| CAI8048728.1 | ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG |
| CAI8048729.1 | ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG |
| CAI8048726.1 | ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG |
| CAI8048731.1 | DEOXYCYTIDYLATE DEAMINASE-RELATED |
| CAI8048732.1 | |
| CAI8048733.1 | |
| CAI8048734.1 | |
| CAI8048736.1 | SI:CH211-189E2.2 |
| CAI8048735.1 | MOLTING PROTEIN MLT-4 |
| CAI8048737.1 | |
| CAI8048738.1 | |
| CAI8048739.1 | |
| CAI8048740.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048741.1 | |
| CAI8048742.1 | |
| CAI8048743.1 | |
| CAI8048744.1 | ATP-DEPENDENT CLP PROTEASE |
| CAI8048745.1 | TIS1421-TRANSPOSASE PROTEIN A |
| CAI8048746.1 | DNA REPAIR PROTEIN RADA |
| CAI8048747.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8048748.1 | INOSINE-5-MONOPHOSPHATE DEHYDROGENASE RELATED |
| CAI8048749.1 | |
| CAI8048750.1 | DNA POLYMERASE III SUBUNIT ALPHA |
| CAI8048751.1 | DNA PRIMASE |
| CAI8048752.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8048753.1 | RNA POLYMERASE SIGMA FACTOR RPO |
| CAI8048754.1 | |
| CAI8048758.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8048757.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8048756.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8048755.1 | NUCLEOTIDYL TRANSFERASE |
| CAI8048760.1 | TRANSAMIDASE |
| CAI8048759.1 | TRANSAMIDASE |
| CAI8048761.1 | TRANSAMIDASE |
| CAI8048762.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8048763.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8048764.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8048765.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8048766.1 | CYTOKINE RECEPTOR |
| CAI8048767.1 | TITIN |
| CAI8048768.1 | |
| CAI8048769.1 | |
| CAI8048770.1 |
