Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048872.1 | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 |
| CAI8048871.1 | ENDOTHELIAL DIFFERENTIATION-RELATED FACTOR 1 MULTIPROTEIN BRIDGING FACTOR 1 |
| CAI8048874.1 | METALLOPROTEASE TLDD |
| CAI8048873.1 | |
| CAI8048876.1 | METALLOPROTEASE TLDD |
| CAI8048875.1 | METALLOPROTEASE TLDD |
| CAI8048877.1 | SNRNP CORE PROTEIN FAMILY MEMBER |
| CAI8048878.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
| CAI8048879.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
| CAI8048880.1 | CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 157 |
| CAI8048881.1 | TRANSMEMBRANE PROTEIN 19 |
| CAI8048883.1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 |
| CAI8048884.1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 |
| CAI8048882.1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 |
| CAI8048885.1 | ACYL-COA-BINDING DOMAIN-CONTAINING PROTEIN 6 |
| CAI8048886.1 | ACYL-COA-BINDING PROTEIN, ACBP |
| CAI8048887.1 | PLACENTAL PROTEIN 6 |
| CAI8048888.1 | PLACENTAL PROTEIN 6 |
| CAI8048889.1 | |
| CAI8048890.1 | |
| CAI8048895.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048896.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8048893.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048892.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048891.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048894.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048898.1 | |
| CAI8048897.1 | |
| CAI8048899.1 | SPINSTER |
| CAI8048900.1 | SPINSTER |
| CAI8048901.1 | 40S RIBOSOMAL PROTEIN S12 |
| CAI8048902.1 | |
| CAI8048903.1 | |
| CAI8048904.1 | |
| CAI8048905.1 | CORONIN |
| CAI8048907.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8048906.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8048908.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8048909.1 | CORONIN |
| CAI8048910.1 | CORONIN |
| CAI8048912.1 | HYDROLASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G12880)-RELATED |
| CAI8048911.1 | |
| CAI8048913.1 | |
| CAI8048914.1 | |
| CAI8048915.1 | |
| CAI8048917.1 | ALTERNATIVE OXIDASE |
| CAI8048916.1 | ALTERNATIVE OXIDASE |
| CAI8048918.1 | |
| CAI8048920.1 | |
| CAI8048919.1 |
