Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048571.1 | CAMK FAMILY PROTEIN KINASE |
| CAI8048580.1 | FIBRILLIN-RELATED |
| CAI8048581.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048577.1 | PROTEIN BARK BEETLE |
| CAI8048579.1 | FIBRILLIN-RELATED |
| CAI8048575.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048576.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048572.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048573.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048574.1 | SRCR DOMAIN-CONTAINING PROTEIN |
| CAI8048578.1 | FIBRILLIN-RELATED |
| CAI8048582.1 | CHORISMATE MUTASE |
| CAI8048583.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8048584.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8048585.1 | EXSB FAMILY PROTEIN |
| CAI8048586.1 | |
| CAI8048587.1 | |
| CAI8048588.1 | RIBONUCLEASE H1 |
| CAI8048589.1 | RNA M5U METHYLTRANSFERASE |
| CAI8048592.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8048591.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8048590.1 | DNA TOPOISOMERASE, TYPE IA, CORE |
| CAI8048593.1 | PROTEIN SMF |
| CAI8048594.1 | PROTEIN SMF |
| CAI8048595.1 | 2-KETO-3-DEOXY-L-RHAMNONATE ALDOLASE |
| CAI8048596.1 | METHIONINE SYNTHASE |
| CAI8048599.1 | PORCUPINE |
| CAI8048598.1 | PORCUPINE |
| CAI8048597.1 | |
| CAI8048600.1 | PORCUPINE |
| CAI8048601.1 | |
| CAI8048606.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8048604.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8048605.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8048602.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8048603.1 | UVRD / RECB / PCRA DNA HELICASE FAMILY MEMBER |
| CAI8048607.1 | INTEGRAL MEMBRANE EFFLUX PROTEIN-RELATED |
| CAI8048608.1 | ALKANESULFONATE MONOOXYGENASE-RELATED |
| CAI8048609.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8048610.1 | NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 4 |
| CAI8048611.1 | NADH DEHYDROGENASE |
| CAI8048612.1 | TRANSPOSASE RV3428C-RELATED |
| CAI8048613.1 | |
| CAI8048615.1 | SORBITOL DEHYDROGENASE |
| CAI8048614.1 | SORBITOL DEHYDROGENASE |
| CAI8048616.1 | |
| CAI8048617.1 | BLR3681 PROTEIN |
| CAI8048618.1 | |
| CAI8048619.1 | |
| CAI8048620.1 | TYPE I RESTRICTION ENZYME ECOKI R PROTEIN |
