Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048321.1 | UNCHARACTERIZED |
| CAI8048323.1 | DIHYDROFOLATE REDUCTASE |
| CAI8048322.1 | DIHYDROFOLATE REDUCTASE |
| CAI8048324.1 | |
| CAI8048327.1 | NAD(P)H-HYDRATE EPIMERASE |
| CAI8048326.1 | NAD(P)H-HYDRATE EPIMERASE |
| CAI8048325.1 | NAD(P)H-HYDRATE EPIMERASE |
| CAI8048329.1 | MYOSIN |
| CAI8048328.1 | MYOSIN |
| CAI8048330.1 | |
| CAI8048331.1 | |
| CAI8048332.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8048333.1 | |
| CAI8048334.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8048335.1 | |
| CAI8048336.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8048337.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8048338.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8048339.1 | MOLTING PROTEIN MLT-4 |
| CAI8048340.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8048341.1 | ANKYRIN REPEAT CONTAINING |
| CAI8048342.1 | |
| CAI8048344.1 | PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE |
| CAI8048343.1 | |
| CAI8048346.1 | RADIAL SPOKEHEAD-RELATED |
| CAI8048345.1 | RADIAL SPOKEHEAD-RELATED |
| CAI8048347.1 | RADIAL SPOKEHEAD-RELATED |
| CAI8048349.1 | CYTOCHROME C OXIDASE PROTEIN 20 |
| CAI8048348.1 | CYTOCHROME C OXIDASE PROTEIN 20 |
| CAI8048352.1 | DESUMOYLATING ISOPEPTIDASE |
| CAI8048351.1 | DESUMOYLATING ISOPEPTIDASE |
| CAI8048350.1 | DESUMOYLATING ISOPEPTIDASE |
| CAI8048353.1 | DESUMOYLATING ISOPEPTIDASE |
| CAI8048356.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048355.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048354.1 | |
| CAI8048357.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048358.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048361.1 | PECANEX |
| CAI8048360.1 | PECANEX |
| CAI8048359.1 | PECANEX |
| CAI8048366.1 | PECANEX |
| CAI8048365.1 | PECANEX |
| CAI8048364.1 | PECANEX |
| CAI8048363.1 | PECANEX |
| CAI8048362.1 | PECANEX |
| CAI8048367.1 | PECANEX |
| CAI8048368.1 | PECANEX |
| CAI8048369.1 | PECANEX |
| CAI8048370.1 | PECANEX |
