Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048472.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8048473.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8048471.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8048474.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8048475.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8048476.1 | INACTIVE RHOMBOID PROTEIN |
| CAI8048480.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
| CAI8048479.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
| CAI8048478.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
| CAI8048477.1 | DYNEIN REGULATORY COMPLEX SUBUNIT 7 |
| CAI8048482.1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 2 |
| CAI8048483.1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 2 |
| CAI8048481.1 | DNA REPAIR PROTEIN RAD51 HOMOLOG 2 |
| CAI8048486.1 | |
| CAI8048485.1 | |
| CAI8048484.1 | |
| CAI8048487.1 | PLEKHH PROTEIN |
| CAI8048488.1 | PLEKHH PROTEIN |
| CAI8048491.1 | SERYL-TRNA SYNTHETASE |
| CAI8048489.1 | SERYL-TRNA SYNTHETASE |
| CAI8048490.1 | SERYL-TRNA SYNTHETASE |
| CAI8048492.1 | SERYL-TRNA SYNTHETASE |
| CAI8048493.1 | SERYL-TRNA SYNTHETASE |
| CAI8048494.1 | |
| CAI8048495.1 | UPF0669 PROTEIN C6ORF120 |
| CAI8048496.1 | UNCHARACTERIZED |
| CAI8048497.1 | |
| CAI8048498.1 | (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME |
| CAI8048499.1 | |
| CAI8048500.1 | IM:7138239 |
| CAI8048501.1 | IM:7138239 |
| CAI8048502.1 | CHCHD1 |
| CAI8048503.1 | |
| CAI8048505.1 | IM:7138239 |
| CAI8048504.1 | IM:7138239 |
| CAI8048506.1 | |
| CAI8048510.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048507.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048508.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048509.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048511.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048512.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048513.1 | |
| CAI8048515.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048514.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048516.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8048520.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| CAI8048521.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| CAI8048519.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| CAI8048518.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
