Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048371.1 | PECANEX |
| CAI8048372.1 | PECANEX |
| CAI8048374.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048375.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048376.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048373.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048377.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048378.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048379.1 | FORMIN HOMOLOGY 2 FAMILY MEMBER |
| CAI8048380.1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
| CAI8048382.1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
| CAI8048381.1 | ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY |
| CAI8048384.1 | CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN |
| CAI8048383.1 | CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN |
| CAI8048385.1 | IQ CALMODULIN-BINDING MOTIF CONTAINING PROTEIN 1 |
| CAI8048389.1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
| CAI8048388.1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
| CAI8048386.1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
| CAI8048387.1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
| CAI8048390.1 | TYROSYL-DNA PHOSPHODIESTERASE 1 |
| CAI8048391.1 | |
| CAI8048392.1 | DYNACTIN 1-RELATED MICROTUBULE-BINDING |
| CAI8048393.1 | ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 2-RELATED |
| CAI8048394.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048395.1 | HECT DOMAIN UBIQUITIN-PROTEIN LIGASE |
| CAI8048396.1 | |
| CAI8048398.1 | |
| CAI8048397.1 | |
| CAI8048399.1 | |
| CAI8048400.1 | |
| CAI8048402.1 | EPH RECEPTOR A5 |
| CAI8048401.1 | EPH RECEPTOR A5 |
| CAI8048403.1 | CALCIUM AND INTEGRIN BINDING FAMILY MEMBER 2 |
| CAI8048404.1 | RHO GTPASE ACTIVATING PROTEIN 11A |
| CAI8048405.1 | RHO GTPASE ACTIVATING PROTEIN 11A |
| CAI8048406.1 | RHO GTPASE ACTIVATING PROTEIN 11A |
| CAI8048407.1 | RHO GTPASE ACTIVATING PROTEIN 11A |
| CAI8048408.1 | |
| CAI8048410.1 | AP COMPLEX SUBUNIT MU |
| CAI8048409.1 | |
| CAI8048411.1 | AP COMPLEX SUBUNIT MU |
| CAI8048412.1 | LOC361192 |
| CAI8048413.1 | PROLYL-TRNA SYNTHETASE |
| CAI8048414.1 | PROLYL-TRNA SYNTHETASE |
| CAI8048415.1 | PROLYL-TRNA SYNTHETASE |
| CAI8048416.1 | GLUTAMINE-TRNA LIGASE |
| CAI8048417.1 | PROLYL-TRNA SYNTHETASE |
| CAI8048418.1 | GLUTAMINE-TRNA LIGASE |
| CAI8048419.1 | GLUTAMINE-TRNA LIGASE |
| CAI8048420.1 | LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL |
