Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048421.1 | LEUCINE-RICH PPR MOTIF-CONTAINING PROTEIN, MITOCHONDRIAL |
| CAI8048422.1 | MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1 |
| CAI8048423.1 | MOLYBDOPTERIN COFACTOR SYNTHESIS PROTEIN A |
| CAI8048424.1 | STEROL ISOMERASE |
| CAI8048425.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8048426.1 | FATTY ACID ACYL TRANSFERASE-RELATED |
| CAI8048427.1 | ZINC FINGER MYND DOMAIN-CONTAINING PROTEIN 12 |
| CAI8048428.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048429.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048430.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048431.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048432.1 | |
| CAI8048433.1 | SERINE-THREONINE PROTEIN KINASE |
| CAI8048434.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8048435.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048436.1 | EXPRESSED PROTEIN |
| CAI8048437.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048438.1 | RIBOSOMAL PROTEIN S6 KINASE |
| CAI8048443.1 | WD REPEAT-CONTAINING PROTEIN 43 |
| CAI8048442.1 | WD REPEAT-CONTAINING PROTEIN 43 |
| CAI8048441.1 | WD REPEAT-CONTAINING PROTEIN 43 |
| CAI8048440.1 | |
| CAI8048439.1 | WD REPEAT-CONTAINING PROTEIN 43 |
| CAI8048444.1 | WD REPEAT-CONTAINING PROTEIN 43 |
| CAI8048445.1 | RIBONUCLEASE KAPPA |
| CAI8048447.1 | COILED-COIL DOMAIN-CONTAINING 166 |
| CAI8048446.1 | COILED-COIL DOMAIN-CONTAINING 166 |
| CAI8048448.1 | LIN52 FAMILY MEMBER |
| CAI8048449.1 | BCL2-ASSOCIATED ATHANOGENE |
| CAI8048450.1 | |
| CAI8048451.1 | |
| CAI8048452.1 | |
| CAI8048455.1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| CAI8048454.1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| CAI8048453.1 | EQUILIBRATIVE NUCLEOSIDE TRANSPORTER |
| CAI8048456.1 | MALONATE-SEMIALDEHYDE DEHYDROGENASE |
| CAI8048457.1 | AMMONIUM TRANSPORTER |
| CAI8048458.1 | AAA DOMAIN-CONTAINING |
| CAI8048459.1 | RIM BINDING PROTEIN-RELATED |
| CAI8048461.1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
| CAI8048460.1 | UDP-D-XYLOSE:L-FUCOSE ALPHA-1,3-D-XYLOSYLTRANSFERASE-RELATED |
| CAI8048462.1 | NOTUM-RELATED |
| CAI8048463.1 | |
| CAI8048465.1 | NOP SEVEN ASSOCIATED PROTEIN 1 |
| CAI8048464.1 | NOP SEVEN ASSOCIATED PROTEIN 1 |
| CAI8048466.1 | NOP SEVEN ASSOCIATED PROTEIN 1 |
| CAI8048467.1 | NOP SEVEN ASSOCIATED PROTEIN 1 |
| CAI8048468.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 97 |
| CAI8048469.1 | POTASSIUM CHANNEL, SUBFAMILY K |
| CAI8048470.1 |
