Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048222.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8048219.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8048220.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8048221.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8048226.1 | SPERMATHECAL PHYSIOLOGY VARIANT |
| CAI8048225.1 | SYNTAXIN |
| CAI8048227.1 | U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN |
| CAI8048228.1 | U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN |
| CAI8048229.1 | U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN |
| CAI8048234.1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| CAI8048233.1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| CAI8048232.1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| CAI8048231.1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| CAI8048230.1 | TRANSMEMBRANE PROTEIN KIAA1109 |
| CAI8048235.1 | PAXILLIN-RELATED |
| CAI8048236.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8048237.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8048238.1 | TRANSAMIDASE |
| CAI8048239.1 | |
| CAI8048240.1 | |
| CAI8048241.1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| CAI8048243.1 | |
| CAI8048242.1 | |
| CAI8048244.1 | |
| CAI8048250.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048251.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048249.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048248.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048247.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048246.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048245.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048252.1 | SIGNAL RECOGNITION PARTICLE RECEPTOR SUBUNIT ALPHA |
| CAI8048253.1 | |
| CAI8048260.1 | |
| CAI8048258.1 | |
| CAI8048261.1 | |
| CAI8048259.1 | |
| CAI8048257.1 | |
| CAI8048256.1 | |
| CAI8048255.1 | SH3 DOMAIN-CONTAINING |
| CAI8048254.1 | SH3 DOMAIN-CONTAINING |
| CAI8048262.1 | |
| CAI8048263.1 | PDZ AND LIM DOMAIN PROTEIN ZASP |
| CAI8048265.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8048266.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8048267.1 | SH2-SH3 ADAPTOR PROTEIN-RELATED |
| CAI8048264.1 | |
| CAI8048268.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8048269.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8048270.1 |
