Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8047969.1 | LD44762P |
| CAI8047971.1 | LD44762P |
| CAI8047973.1 | LD44762P |
| CAI8047974.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8047975.1 | |
| CAI8047976.1 | |
| CAI8047977.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8047980.1 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
| CAI8047978.1 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
| CAI8047981.1 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
| CAI8047979.1 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
| CAI8047982.1 | ADIPOCYTE-SPECIFIC PROTEIN 4-RELATED |
| CAI8047986.1 | LUPUS LA PROTEIN-RELATED |
| CAI8047987.1 | LUPUS LA PROTEIN-RELATED |
| CAI8047985.1 | RNA RECOGNITION MOTIF RRM DOMAIN CONTAINING PROTEIN |
| CAI8047984.1 | LUPUS LA PROTEIN-RELATED |
| CAI8047983.1 | LUPUS LA PROTEIN-RELATED |
| CAI8047989.1 | PROTEIN ENHANCER OF SEVENLESS 2B |
| CAI8047991.1 | PROTEIN ENHANCER OF SEVENLESS 2B |
| CAI8047990.1 | |
| CAI8047988.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8047993.1 | LD44762P |
| CAI8047992.1 | LD44762P |
| CAI8047994.1 | |
| CAI8047995.1 | |
| CAI8047996.1 | |
| CAI8047997.1 | |
| CAI8047998.1 | |
| CAI8048000.1 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| CAI8047999.1 | DNA2/NAM7 HELICASE FAMILY |
| CAI8048002.1 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| CAI8048003.1 | RIBONUCLEASE |
| CAI8048001.1 | DNA2/NAM7 HELICASE FAMILY MEMBER |
| CAI8048008.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
| CAI8048007.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
| CAI8048005.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
| CAI8048004.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
| CAI8048006.1 | |
| CAI8048009.1 | RHO GUANINE NUCLEOTIDE EXCHANGE FACTOR AT 64C, ISOFORM A |
| CAI8048010.1 | |
| CAI8048013.1 | INHIBITOR OF GROWTH PROTEIN |
| CAI8048012.1 | INHIBITOR OF GROWTH PROTEIN |
| CAI8048011.1 | INHIBITOR OF GROWTH PROTEIN |
| CAI8048014.1 | INHIBITOR OF GROWTH PROTEIN |
| CAI8048016.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8048015.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8048017.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8048018.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8048019.1 | |
| CAI8048020.1 |
