Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048170.1 | TRANSCRIPTION INITIATION FACTOR TFIID |
| CAI8048173.1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
| CAI8048172.1 | |
| CAI8048174.1 | NIEMANN PICK TYPE C2 PROTEIN NPC2-RELATED |
| CAI8048175.1 | TYROSINASE FAMILY MEMBER |
| CAI8048176.1 | |
| CAI8048177.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8048178.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8048180.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8048179.1 | ADAM A DISINTEGRIN AND METALLOPROTEASE DOMAIN |
| CAI8048181.1 | |
| CAI8048182.1 | SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 |
| CAI8048183.1 | |
| CAI8048184.1 | |
| CAI8048187.1 | TRIOKINASE/FMN CYCLASE |
| CAI8048186.1 | TRIOKINASE/FMN CYCLASE |
| CAI8048185.1 | TRIOKINASE/FMN CYCLASE |
| CAI8048188.1 | TRIOKINASE/FMN CYCLASE |
| CAI8048190.1 | HYDROLETHALUS SYNDROME PROTEIN 1 |
| CAI8048191.1 | HYDROLETHALUS SYNDROME PROTEIN 1 |
| CAI8048189.1 | HYDROLETHALUS SYNDROME PROTEIN 1 |
| CAI8048192.1 | HYDROLETHALUS SYNDROME PROTEIN 1 |
| CAI8048193.1 | HYDROLETHALUS SYNDROME PROTEIN 1 |
| CAI8048194.1 | |
| CAI8048195.1 | |
| CAI8048196.1 | CYSTATIN |
| CAI8048197.1 | RIBONUCLEASE T2 |
| CAI8048198.1 | RIBONUCLEASE T2 |
| CAI8048199.1 | PHOSPHOLIPASE D - RELATED |
| CAI8048200.1 | DULLARD PROTEIN PHOSPHATASE |
| CAI8048201.1 | LD33804P |
| CAI8048202.1 | DISCS LARGE |
| CAI8048203.1 | DISCS LARGE |
| CAI8048204.1 | MYOSIN HEAVY CHAIN - RELATED |
| CAI8048206.1 | RETINOL DEHYDROGENASE |
| CAI8048205.1 | RETINOL DEHYDROGENASE |
| CAI8048208.1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG |
| CAI8048207.1 | CYTOCHROME C OXIDASE ASSEMBLY FACTOR 6 HOMOLOG |
| CAI8048209.1 | |
| CAI8048212.1 | |
| CAI8048210.1 | |
| CAI8048211.1 | |
| CAI8048213.1 | |
| CAI8048216.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8048215.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8048214.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8048218.1 | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED |
| CAI8048217.1 | TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED |
| CAI8048223.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
| CAI8048224.1 | MITOGEN-ACTIVATED PROTEIN KINASE |
