Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048517.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| CAI8048522.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| CAI8048523.1 | N6-ADENOSINE-METHYLTRANSFERASE NON-CATALYTIC SUBUNIT |
| CAI8048524.1 | |
| CAI8048525.1 | |
| CAI8048526.1 | |
| CAI8048530.1 | PRE-MRNA-SPLICING FACTOR RBM22 |
| CAI8048529.1 | PRE-MRNA-SPLICING FACTOR RBM22 |
| CAI8048528.1 | PRE-MRNA-SPLICING FACTOR RBM22 |
| CAI8048527.1 | |
| CAI8048531.1 | RECA |
| CAI8048532.1 | RNA-SPLICING LIGASE RTCB |
| CAI8048533.1 | |
| CAI8048534.1 | |
| CAI8048536.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI8048537.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI8048535.1 | |
| CAI8048538.1 | CALCIUM-ACTIVATED CHLORIDE CHANNEL REGULATOR |
| CAI8048539.1 | |
| CAI8048540.1 | |
| CAI8048541.1 | |
| CAI8048542.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8048543.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8048545.1 | |
| CAI8048544.1 | |
| CAI8048546.1 | |
| CAI8048547.1 | |
| CAI8048548.1 | |
| CAI8048549.1 | |
| CAI8048550.1 | |
| CAI8048551.1 | |
| CAI8048552.1 | |
| CAI8048553.1 | |
| CAI8048556.1 | DUF914-RELATED |
| CAI8048555.1 | DUF914-RELATED |
| CAI8048554.1 | |
| CAI8048557.1 | DUF914-RELATED |
| CAI8048558.1 | DUF914-RELATED |
| CAI8048559.1 | |
| CAI8048560.1 | |
| CAI8048562.1 | SENTRIN-SPECIFIC PROTEASE |
| CAI8048561.1 | SENTRIN-SPECIFIC PROTEASE |
| CAI8048563.1 | MUSKELIN |
| CAI8048565.1 | TYROSINE-PROTEIN PHOSPHATASE NON-RECEPTOR TYPE 13 |
| CAI8048564.1 | |
| CAI8048566.1 | MITOCHONDRIAL INNER MEMBRANE PROTEASE |
| CAI8048568.1 | SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN |
| CAI8048569.1 | SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN |
| CAI8048567.1 | SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN |
| CAI8048570.1 | SLIT-ROBO RHO GTPASE ACTIVATING PROTEIN |
