Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048621.1 | TYPE I RESTRICTION ENZYME ECOKI R PROTEIN |
| CAI8048622.1 | SLR6095 PROTEIN |
| CAI8048623.1 | |
| CAI8048624.1 | RIBONUCLEASE VAPC3 |
| CAI8048625.1 | RIBONUCLEASE VAPC2 |
| CAI8048626.1 | THIAZOLE SYNTHASE |
| CAI8048627.1 | THIAZOLE SYNTHASE |
| CAI8048628.1 | THIAZOLE SYNTHASE |
| CAI8048629.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8048630.1 | THIAMINE-PHOSPHATE PYROPHOSPHORYLASE |
| CAI8048631.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8048632.1 | - |
| CAI8048633.1 | CATION EFFLUX SYSTEM PROTEIN CUSB |
| CAI8048634.1 | OUTER MEMBRANE PROTEIN TOLC |
| CAI8048635.1 | OUTER MEMBRANE CATION EFFLUX PROTEIN |
| CAI8048636.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8048637.1 | GAMMA-GLUTAMYLTRANSPEPTIDASE (AFU_ORTHOLOGUE AFUA_4G13580) |
| CAI8048640.1 | DNA-BINDING PROTEIN HU |
| CAI8048639.1 | DNA-BINDING PROTEIN HU |
| CAI8048638.1 | DNA-BINDING PROTEIN HU |
| CAI8048641.1 | GTP CYCLOHYDROLASE I |
| CAI8048642.1 | GTP CYCLOHYDROLASE I |
| CAI8048643.1 | GTP CYCLOHYDROLASE I |
| CAI8048644.1 | GTP CYCLOHYDROLASE I |
| CAI8048645.1 | GTP CYCLOHYDROLASE I |
| CAI8048646.1 | |
| CAI8048647.1 | MOLYBDENUM COFACTOR BIOSYNTHESIS PROTEIN B |
| CAI8048648.1 | ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC |
| CAI8048649.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8048650.1 | 50S RIBOSOMAL PROTEIN L28 |
| CAI8048651.1 | GUANOSINE-3',5'-BIS DIPHOSPHATE 3'-PYROPHOSPHOHYDROLASE |
| CAI8048652.1 | ACETYL-COENZYME A SYNTHETASE |
| CAI8048653.1 | GLYCOLATE OXIDASE IRON-SULFUR SUBUNIT |
| CAI8048654.1 | AMMONIUM TRANSPORTER |
| CAI8048655.1 | AB HYDROLASE SUPERFAMILY PROTEIN C4A8.06C |
| CAI8048656.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8048657.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8048658.1 | |
| CAI8048659.1 | ACETYL-COA C-ACYLTRANSFERASE |
| CAI8048660.1 | 3-KETOACYL-COA THIOLASE, PEROXISOMAL |
| CAI8048661.1 | SUGAR NUCLEOTIDE EPIMERASE RELATED |
| CAI8048662.1 | SUGAR NUCLEOTIDE EPIMERASE RELATED |
| CAI8048663.1 | ANTITOXIN HICB |
| CAI8048664.1 | |
| CAI8048665.1 | VACUOLAR SORTING PROTEIN 35 |
| CAI8048668.1 | |
| CAI8048666.1 | |
| CAI8048667.1 | |
| CAI8048669.1 | |
| CAI8048670.1 |
