Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8048820.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8048822.1 | |
| CAI8048823.1 | |
| CAI8048832.1 | SPONDIN |
| CAI8048824.1 | SPONDIN |
| CAI8048830.1 | SPONDIN |
| CAI8048828.1 | SPONDIN |
| CAI8048826.1 | SPONDIN |
| CAI8048829.1 | SPONDIN |
| CAI8048827.1 | SPONDIN |
| CAI8048825.1 | SPONDIN |
| CAI8048831.1 | SPONDIN |
| CAI8048833.1 | SPONDIN |
| CAI8048834.1 | SPONDIN |
| CAI8048835.1 | SPONDIN |
| CAI8048837.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8048836.1 | ZINC METALLOPROTEASE FAMILY M13 NEPRILYSIN-RELATED |
| CAI8048839.1 | |
| CAI8048838.1 | |
| CAI8048841.1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| CAI8048843.1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| CAI8048845.1 | |
| CAI8048846.1 | MYOSIN HEAVY CHAIN, NON-MUSCLE |
| CAI8048842.1 | CENTROSOMAL PROTEIN 2 |
| CAI8048844.1 | CENTROSOMAL PROTEIN 2 |
| CAI8048848.1 | CENTROSOMAL PROTEIN 2 |
| CAI8048847.1 | |
| CAI8048840.1 | |
| CAI8048850.1 | |
| CAI8048849.1 | |
| CAI8048853.1 | |
| CAI8048852.1 | |
| CAI8048851.1 | |
| CAI8048854.1 | |
| CAI8048855.1 | |
| CAI8048856.1 | |
| CAI8048857.1 | |
| CAI8048858.1 | ARMADILLO SEGMENT POLARITY PROTEIN |
| CAI8048859.1 | ARMADILLO SEGMENT POLARITY PROTEIN |
| CAI8048860.1 | |
| CAI8048862.1 | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT |
| CAI8048861.1 | GERANYLGERANYL TRANSFERASE TYPE BETA SUBUNIT |
| CAI8048864.1 | PETER PAN-RELATED |
| CAI8048863.1 | PETER PAN-RELATED |
| CAI8048866.1 | PETER PAN-RELATED |
| CAI8048865.1 | PETER PAN-RELATED |
| CAI8048868.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8048867.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8048869.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8048870.1 | HEAT SHOCK PROTEIN 70KDA |
