Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049172.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8049171.1 | FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED |
| CAI8049173.1 | |
| CAI8049174.1 | |
| CAI8049175.1 | |
| CAI8049176.1 | |
| CAI8049177.1 | |
| CAI8049180.1 | LRP2-BINDING PROTEIN |
| CAI8049179.1 | LRP2-BINDING PROTEIN |
| CAI8049178.1 | LRP2-BINDING PROTEIN |
| CAI8049181.1 | LRP2-BINDING PROTEIN |
| CAI8049182.1 | |
| CAI8049186.1 | PROTEIN NEDD1 |
| CAI8049187.1 | PROTEIN NEDD1 |
| CAI8049185.1 | PROTEIN NEDD1 |
| CAI8049184.1 | PROTEIN NEDD1 |
| CAI8049183.1 | PROTEIN NEDD1 |
| CAI8049188.1 | WD40 REPEAT PROTEIN |
| CAI8049190.1 | |
| CAI8049189.1 | |
| CAI8049191.1 | WD40 REPEAT PF20 |
| CAI8049192.1 | WD40 REPEAT PF20 |
| CAI8049193.1 | WD40 REPEAT PF20 |
| CAI8049194.1 | WD40 REPEAT PF20 |
| CAI8049195.1 | |
| CAI8049196.1 | PROTEIN PBDC1 |
| CAI8049197.1 | |
| CAI8049198.1 | |
| CAI8049199.1 | |
| CAI8049200.1 | |
| CAI8049201.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8049202.1 | |
| CAI8049206.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049208.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049207.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049209.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049210.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049205.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049204.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049203.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049211.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049212.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049213.1 | STRUCTURAL MAINTENANCE OF CHROMOSOMES PROTEIN 3 |
| CAI8049214.1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| CAI8049216.1 | PROTEIN FOLDING REGULATOR |
| CAI8049215.1 | PROTEIN FOLDING REGULATOR |
| CAI8049218.1 | UNCHARACTERIZED |
| CAI8049217.1 | UNCHARACTERIZED |
| CAI8049221.1 | UNCHARACTERIZED |
| CAI8049219.1 | UNCHARACTERIZED |
