About Geodia barretti

Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.

Classification

Animalia (Kingdom); Porifera (Phylum); Demospongiae (Class); Heteroscleromorpha (Subclass); Tetractinellida (Order); Astrophorina (Suborder); Geodiidae (Family); Geodiinae (Subfamily); Geodia (Genus); Geodia barretti (Species)

Original Name

Geodia barretti Bowerbank, 1858

Key Reference Paper

1. Bowerbank J S. On the Anatomy and Physiology of the Spongiadae[J]. Proceedings of the Royal Society of London, 1856, 8: 573-577. (Bowerbank et al., 1858)
2. Cárdenas P, Rapp H T, Klitgaard A B, et al. Taxonomy, biogeography and DNA barcodes of Geodia species (Porifera, Demospongiae, Tetractinellida) in the Atlantic boreo-arctic region[J]. Zoological Journal of the Linnean Society, 2013, 169(2): 251-311. (Cárdenas et al., 2013)

Description

the generally smooth surface (absence of hispidity and epibionts) and white colour. The irregular form, especially in specimens larger than about 15 cm in diameter. The clearly visible sieves in the sometimes numerous preoscular cavities. Spicules: usually dichotriaenes and strongylasters

Distribution

Geodia barretti has been found at depths from 30 to 2000 m.


Basic Information
SpeciesPhylumCommon NameEcosystemDepthHabitatNCBI Taxonomy ID
Geodia barrettiPoriferadeep-sea spongeDeep sea30-2000Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483)519541

Genome Assembly Information
Genome AssemblyGenome SizeAssembly levelReleased yearWGS accessionSubmitterBioProjectBUSCO completeness (%)Scaffold/Contig N50 (kb)GC content (%)Repeat Rate (%)Gene Number
Geodia_barretti_n_2022_12144.8MbScaffold2024CASHTH01pharmaceutical biosciences, uppsala universityPRJEB5804671.50 48.449.319.0531,884

References
TitleJournalPubmed ID
Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae)G3 (Bethesda)37619978

Gene Information

<< First 1034 1035 1036 1037 1038 1039 1040 1041 1042 1043 Forward> Last>>        3063 pages in total

Gene IDDescription
CAI8018151.1DEHYDROGENASE, PUTATIVE-RELATED
CAI8018152.1DIHYDRODIPICOLINATE REDUCTASE
CAI8018153.1DIHYDRODIPICOLINATE REDUCTASE
CAI8018154.1NADH-QUINONE OXIDOREDUCTASE SUBUNIT F
CAI8018155.1NADH-QUINONE OXIDOREDUCTASE SUBUNIT F
CAI8018156.1REGULATOR OF RPOS
CAI8018157.1DUDULIN-RELATED
CAI8018158.1METHYLMALONYL-COA EPIMERASE
CAI8018159.1N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL DE-N-ACETYLASE-RELATED
CAI8018160.1MEMBRANE TRANSPORTER PROTEIN MJ0441-RELATED
CAI8018161.1OXIDOREDUCTASE-RELATED
CAI8018162.1ATPASE-LIKE PROTEIN
CAI8018163.1FUMARYLACETOACETATE HYDROLASE DOMAIN-CONTAINING PROTEIN 2A-RELATED
CAI8018164.15-FORMYLTETRAHYDROFOLATE CYCLO-LIGASE-RELATED
CAI8018165.1-
CAI8018166.1-
CAI8018167.1LYSYL-TRNA SYNTHETASE
CAI8018168.1LYSYL-TRNA SYNTHETASE
CAI8018169.1LYSYL-TRNA SYNTHETASE
CAI8018170.1LYSYL-TRNA SYNTHETASE
TOP