Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049321.1 | |
| CAI8049322.1 | |
| CAI8049323.1 | DEHYDROGENASE/REDUCTASE (SDR FAMILY) MEMBER 4 |
| CAI8049324.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8049325.1 | TRANSAMIDASE |
| CAI8049326.1 | |
| CAI8049327.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8049328.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8049329.1 | SULFATASE MODIFYING FACTOR 1, 2 |
| CAI8049330.1 | BETA-LACTAMASE-RELATED |
| CAI8049331.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8049332.1 | DIHYDROXY-ACID DEHYDRATASE DAD |
| CAI8049333.1 | |
| CAI8049334.1 | |
| CAI8049335.1 | S-ADENOSYL-L-METHIONINE-DEPENDENT METHYLTRANSFERASES SUPERFAMILY PROTEIN |
| CAI8049336.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE (AFU_ORTHOLOGUE AFUA_6G11210) |
| CAI8049337.1 | METHYLESTERASE FAMILY MEMBER |
| CAI8049338.1 | |
| CAI8049339.1 | |
| CAI8049340.1 | |
| CAI8049341.1 | SHORT-CHAIN DEHYDROGENASES/REDUCTASES FAMILY MEMBER |
| CAI8049342.1 | ENOYL-COA HYDRATASE |
| CAI8049343.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8049344.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8049345.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8049346.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8049347.1 | L-THREONINE 3-DEHYDROGENASE |
| CAI8049348.1 | |
| CAI8049349.1 | BLR5614 PROTEIN-RELATED |
| CAI8049350.1 | BLR5612 PROTEIN |
| CAI8049351.1 | ADENYLOSUCCINATE LYASE |
| CAI8049352.1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
| CAI8049353.1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
| CAI8049354.1 | GLUTARYL-COA DEHYDROGENASE, MITOCHONDRIAL |
| CAI8049355.1 | LUCIFERASE-LIKE MONOOXYGENASE |
| CAI8049356.1 | PEPTIDYL-TRNA HYDROLASE |
| CAI8049357.1 | COBALT-PRECORRIN-8 METHYLMUTASE |
| CAI8049358.1 | COBALT-PRECORRIN-8 METHYLMUTASE |
| CAI8049359.1 | SIROHYDROCHLORIN FERROCHELATASE, CHLOROPLASTIC |
| CAI8049360.1 | COBALT-PRECORRIN-5B C(1)-METHYLTRANSFERASE |
| CAI8049361.1 | COBALT-PRECORRIN-2 C(20)-METHYLTRANSFERASE |
| CAI8049362.1 | SIROHEME SYNTHASE-RELATED |
| CAI8049363.1 | COBALT-PRECORRIN-5A HYDROLASE |
| CAI8049364.1 | |
| CAI8049365.1 | UNCHARACTERIZED |
| CAI8049369.1 | AGAP010540-PA |
| CAI8049368.1 | AGAP010540-PA |
| CAI8049367.1 | AGAP010540-PA |
| CAI8049366.1 | AGAP010540-PA |
| CAI8049370.1 |
