Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049271.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8049272.1 | ATP PHOSPHORIBOSYLTRANSFERASE ATP-PRTASE |
| CAI8049273.1 | |
| CAI8049274.1 | HISTIDINOL DEHYDROGENASE HDH |
| CAI8049275.1 | HISTIDINOL-PHOSPHATE AMINOTRANSFERASE-RELATED |
| CAI8049276.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8049277.1 | IMIDAZOLEGLYCEROL-PHOSPHATE DEHYDRATASE HIS7 |
| CAI8049278.1 | ENOYL-COA HYDRATASE |
| CAI8049279.1 | STOMATIN-LIKE PROTEIN 2, MITOCHONDRIAL |
| CAI8049281.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI8049280.1 | LYSINE/ARGININE/ORNITHINE TRANSPORT SYSTEM KINASE |
| CAI8049282.1 | RHAMNOSYLTRANSFERASE WBBL |
| CAI8049283.1 | CYSTEINYL-TRNA SYNTHETASE |
| CAI8049284.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8049285.1 | THIAMINE PYROPHOSPHATE ENZYMES |
| CAI8049286.1 | |
| CAI8049287.1 | |
| CAI8049288.1 | |
| CAI8049289.1 | LD33804P |
| CAI8049290.1 | |
| CAI8049295.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8049293.1 | ANKYRIN REPEAT CONTAINING |
| CAI8049292.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8049291.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8049294.1 | ANKYRIN REPEAT FAMILY PROTEIN |
| CAI8049297.1 | ANKYRIN REPEAT FAMILY A |
| CAI8049296.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN-RELATED |
| CAI8049298.1 | |
| CAI8049299.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8049300.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8049301.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8049302.1 | PHENYLALANYL-TRNA SYNTHETASE BETA CHAIN AND LEUCINE-RICH REPEAT-CONTAINING PROTEIN 47 |
| CAI8049303.1 | |
| CAI8049304.1 | PHENYLALANYL-TRNA SYNTHETASE |
| CAI8049305.1 | |
| CAI8049306.1 | PAREP8-RELATED |
| CAI8049307.1 | FAD-DEPENDENT OXIDOREDUCTASE |
| CAI8049308.1 | |
| CAI8049309.1 | FLAVIN REDUCTASE |
| CAI8049310.1 | ARGINASE/AGMATINASE |
| CAI8049311.1 | DNA GYRASE/TOPOISOMERASE SUBUNIT B |
| CAI8049312.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8049313.1 | CYSTATHIONINE BETA-SYNTHASE |
| CAI8049314.1 | |
| CAI8049315.1 | |
| CAI8049316.1 | |
| CAI8049317.1 | THIOSULFATE SULFURTRANSFERASE |
| CAI8049318.1 | |
| CAI8049319.1 | EXSB FAMILY PROTEIN |
| CAI8049320.1 | BIFUNCTIONAL POLYMYXIN RESISTANCE PROTEIN ARNA |
