Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049421.1 | SOLUTE CARRIER FAMILY 35 |
| CAI8049424.1 | WD REPEAT-CONTAINING PROTEIN 27 |
| CAI8049423.1 | WD REPEAT-CONTAINING PROTEIN 27 |
| CAI8049422.1 | WD REPEAT-CONTAINING PROTEIN 27 |
| CAI8049425.1 | WD REPEAT-CONTAINING PROTEIN 27 |
| CAI8049426.1 | |
| CAI8049427.1 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
| CAI8049428.1 | BLOC-1-RELATED COMPLEX SUBUNIT 5 |
| CAI8049429.1 | CXYORF1 |
| CAI8049430.1 | UNCHARACTERIZED |
| CAI8049431.1 | |
| CAI8049432.1 | |
| CAI8049433.1 | |
| CAI8049435.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049437.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049436.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049434.1 | |
| CAI8049438.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049439.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049440.1 | SERINE/THREONINE-PROTEIN KINASE |
| CAI8049442.1 | GH04784P |
| CAI8049441.1 | GH04784P |
| CAI8049443.1 | GH04784P |
| CAI8049444.1 | |
| CAI8049445.1 | TRANSMEMBRANE 7 SUPERFAMILY MEMBER 3 |
| CAI8049446.1 | 40S RIBOSOMAL PROTEIN S10 |
| CAI8049450.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8049449.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8049448.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8049447.1 | DNA POLYMERASE CATALYTIC SUBUNIT |
| CAI8049451.1 | |
| CAI8049452.1 | NEPHRIN |
| CAI8049453.1 | NEPHRIN |
| CAI8049454.1 | |
| CAI8049455.1 | |
| CAI8049456.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8049457.1 | ATP-BINDING CASSETTE SUB-FAMILY B |
| CAI8049458.1 | RNA POLYMERASE ECF-TYPE SIGMA FACTO |
| CAI8049459.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8049460.1 | |
| CAI8049461.1 | PROTEASE M1 ZINC METALLOPROTEASE |
| CAI8049462.1 | TYROSINASE FAMILY MEMBER |
| CAI8049464.1 | |
| CAI8049463.1 | |
| CAI8049465.1 | |
| CAI8049466.1 | 3-DEHYDROQUINATE SYNTHASE |
| CAI8049468.1 | SHIKIMATE KINASE |
| CAI8049467.1 | SHIKIMATE KINASE |
| CAI8049469.1 | LYASE, PUTATIVE-RELATED-RELATED |
| CAI8049472.1 | PHOSPHORIBOSYLFORMYLGLYCINAMIDINE SYNTHASE SUBUNIT PURQ |
