Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049571.1 | GTPASE DER |
| CAI8049572.1 | INNER MEMBRANE PROTEIN YGIH |
| CAI8049573.1 | IRON-SULFUR CLUSTER-BINDING PROTEIN-RELATED |
| CAI8049574.1 | ENDORIBONUCLEASE LACTB2 |
| CAI8049575.1 | THIOREDOXIN REDUCTASE 1-RELATED-RELATED |
| CAI8049576.1 | THIAMINE BIOSYNTHESIS PROTEIN THIC |
| CAI8049577.1 | SODIUM/PROLINE SYMPORTER-RELATED |
| CAI8049578.1 | METHYLTRANSFERASE |
| CAI8049579.1 | ZGC:194242 |
| CAI8049580.1 | ZGC:194242 |
| CAI8049581.1 | ASPARTATE 1-DECARBOXYLASE |
| CAI8049582.1 | |
| CAI8049583.1 | QUINONE OXIDOREDUCTASE PIG3-RELATED |
| CAI8049584.1 | TRANSCRIPTION ELONGATION FACTOR GREA |
| CAI8049585.1 | |
| CAI8049586.1 | |
| CAI8049587.1 | PTHR43509 |
| CAI8049588.1 | PTHR43509 |
| CAI8049589.1 | ASPARTATE AMINOTRANSFERASE YHDR-RELATED |
| CAI8049590.1 | |
| CAI8049591.1 | CYTOSINE-SPECIFIC METHYLTRANSFERASE |
| CAI8049592.1 | UTP--GLUCOSE-1-PHOSPHATE URIDYLYLTRANSFERASE |
| CAI8049593.1 | |
| CAI8049594.1 | |
| CAI8049595.1 | POLYNUCLEOTIDYL TRANSFERASE, RIBONUCLEASE H-LIKE SUPERFAMILY PROTEIN |
| CAI8049596.1 | ALANYL-TRNA SYNTHETASE |
| CAI8049597.1 | ALANYL-TRNA SYNTHETASE |
| CAI8049598.1 | ALANYL-TRNA SYNTHETASE |
| CAI8049599.1 | |
| CAI8049600.1 | ATPASE-LIKE PROTEIN |
| CAI8049601.1 | ALKYL HYDROPEROXIDE REDUCTASE AHPD |
| CAI8049602.1 | GLUCOSAMINE--FRUCTOSE-6-PHOSPHATE AMINOTRANSFERASE, ISOMERIZING |
| CAI8049603.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8049604.1 | |
| CAI8049605.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8049606.1 | 4-HYDROXYPHENYLACETATE 3-MONOOXYGENASE-RELATED |
| CAI8049607.1 | AMINOHYDROLASE SSNA-RELATED |
| CAI8049608.1 | 3BP-1 RELATED RHOGAP |
| CAI8049609.1 | KELCH PROTEIN |
| CAI8049612.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8049611.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8049610.1 | ATP-DEPENDENT RNA HELICASE DBP3 |
| CAI8049615.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 |
| CAI8049614.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 |
| CAI8049613.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 |
| CAI8049620.1 | CENTROSOMAL PROTEIN OF 131 KDA |
| CAI8049618.1 | CENTROSOMAL PROTEIN OF 131 KDA |
| CAI8049619.1 | CENTROSOMAL PROTEIN OF 131 KDA |
| CAI8049617.1 | CENTROSOMAL PROTEIN OF 131 KDA |
| CAI8049616.1 | CENTROSOMAL PROTEIN OF 131 KDA |
