Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8049621.1 | CENTROSOMAL PROTEIN OF 131 KDA |
| CAI8049622.1 | |
| CAI8049627.1 | CCR4 NOT-RELATED |
| CAI8049625.1 | CCR4 NOT-RELATED |
| CAI8049624.1 | CCR4 NOT-RELATED |
| CAI8049626.1 | CCR4 NOT-RELATED |
| CAI8049623.1 | CCR4 NOT-RELATED |
| CAI8049628.1 | CCR4 NOT-RELATED |
| CAI8049629.1 | CCR4 NOT-RELATED |
| CAI8049630.1 | CCR4 NOT-RELATED |
| CAI8049631.1 | CCR4 NOT-RELATED |
| CAI8049632.1 | CCR4 NOT-RELATED |
| CAI8049633.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8049634.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8049635.1 | ANKYRIN DOMAIN-CONTAINING |
| CAI8049637.1 | HEXOKINASE FAMILY MEMBER |
| CAI8049638.1 | HEXOKINASE FAMILY MEMBER |
| CAI8049636.1 | SUGAR KINASE |
| CAI8049644.1 | LP21163P |
| CAI8049643.1 | LP21163P |
| CAI8049642.1 | LP21163P |
| CAI8049641.1 | |
| CAI8049639.1 | |
| CAI8049640.1 | |
| CAI8049645.1 | LP21163P |
| CAI8049646.1 | LP21163P |
| CAI8049647.1 | RHO GDP-DISSOCIATION INHIBITOR |
| CAI8049648.1 | RHO GDP-DISSOCIATION INHIBITOR |
| CAI8049649.1 | BETA LACTAMASE DOMAIN |
| CAI8049650.1 | METHIONINE-R-SULFOXIDE REDUCTASE B1 |
| CAI8049651.1 | METHIONINE-R-SULFOXIDE REDUCTASE B1 |
| CAI8049652.1 | 40S RIBOSOMAL PROTEIN S15A |
| CAI8049653.1 | |
| CAI8049654.1 | |
| CAI8049655.1 | - |
| CAI8049656.1 | |
| CAI8049657.1 | |
| CAI8049658.1 | |
| CAI8049659.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8049660.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8049661.1 | |
| CAI8049663.1 | |
| CAI8049662.1 | |
| CAI8049664.1 | |
| CAI8049665.1 | |
| CAI8049667.1 | CYTOKINE RECEPTOR |
| CAI8049668.1 | PROTEIN SIDEKICK |
| CAI8049666.1 | TITIN |
| CAI8049670.1 | CYTOKINE RECEPTOR |
| CAI8049669.1 | CYTOKINE RECEPTOR |
