Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050067.1 | KINETOCHORE-ASSOCIATED PROTEIN 1 |
| CAI8050066.1 | KINETOCHORE-ASSOCIATED PROTEIN 1 |
| CAI8050073.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8050074.1 | STAR-RELATED LIPID TRANSFER PROTEIN 9 |
| CAI8050075.1 | |
| CAI8050076.1 | |
| CAI8050081.1 | |
| CAI8050079.1 | |
| CAI8050080.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050078.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050077.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050082.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050083.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050084.1 | |
| CAI8050087.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| CAI8050086.1 | PHOSPHOTYROSINE INTERACTION DOMAIN-CONTAINING FAMILY MEMBER |
| CAI8050085.1 | |
| CAI8050088.1 | OS02G0815200 PROTEIN |
| CAI8050089.1 | PROTEASOME ASSEMBLY CHAPERONE 1 |
| CAI8050090.1 | FAT ATYPICAL CADHERIN-RELATED |
| CAI8050091.1 | CADHERIN-23 |
| CAI8050092.1 | |
| CAI8050093.1 | |
| CAI8050094.1 | |
| CAI8050096.1 | 30S/40S RIBOSOMAL PROTEIN S4 |
| CAI8050095.1 | 30S/40S RIBOSOMAL PROTEIN S4 |
| CAI8050097.1 | CTP SYNTHASE |
| CAI8050098.1 | CTP SYNTHASE |
| CAI8050099.1 | CTP SYNTHASE |
| CAI8050100.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8050101.1 | |
| CAI8050102.1 | DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER |
| CAI8050104.1 | FERREDOXIN/ADRENODOXIN |
| CAI8050105.1 | FERREDOXIN/ADRENODOXIN |
| CAI8050108.1 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
| CAI8050107.1 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
| CAI8050106.1 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
| CAI8050109.1 | MACROPHAGE-EXPRESSED GENE 1 PROTEIN |
| CAI8050103.1 | POLYKETIDE SYNTHASE-RELATED |
| CAI8050114.1 | NEPHRIN |
| CAI8050113.1 | NEPHRIN |
| CAI8050112.1 | NEPHRIN |
| CAI8050111.1 | CONTACTIN 5 |
| CAI8050110.1 | NEPHRIN |
| CAI8050115.1 | |
| CAI8050116.1 | |
| CAI8050117.1 | PEROXISOMAL TARGETING SIGNAL 2 RECEPTOR |
| CAI8050118.1 | TENASCIN |
| CAI8050119.1 | |
| CAI8050120.1 |
