Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050124.1 | DNA LIGASE |
| CAI8050123.1 | DNA LIGASE |
| CAI8050122.1 | DNA LIGASE |
| CAI8050121.1 | DNA LIGASE |
| CAI8050125.1 | DNA LIGASE |
| CAI8050126.1 | |
| CAI8050127.1 | FORKHEAD BOX PROTEIN O |
| CAI8050128.1 | FORKHEAD BOX PROTEIN O |
| CAI8050129.1 | |
| CAI8050130.1 | CADHERIN-23 |
| CAI8050131.1 | |
| CAI8050133.1 | NETRIN/LAMININ-RELATED |
| CAI8050132.1 | NETRIN/LAMININ-RELATED |
| CAI8050134.1 | ZINC FINGER PROTEIN ZIC AND GLI |
| CAI8050135.1 | PROPROTEIN CONVERTASE SUBTILISIN/KEXIN-RELATED |
| CAI8050137.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| CAI8050138.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| CAI8050136.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| CAI8050139.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 180 |
| CAI8050143.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8050142.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8050141.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8050140.1 | CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR FAMILY MEMBER |
| CAI8050147.1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
| CAI8050145.1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
| CAI8050146.1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
| CAI8050144.1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
| CAI8050148.1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
| CAI8050149.1 | FALZ-RELATED BROMODOMAIN-CONTAINING PROTEINS |
| CAI8050150.1 | BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, HES-RELATED |
| CAI8050151.1 | SYNAPTONEMAL COMPLEX CENTRAL ELEMENT PROTEIN 2 |
| CAI8050157.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050156.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050155.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050154.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050153.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050152.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050159.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050158.1 | AUTOPHAGY PROTEIN 16-LIKE |
| CAI8050162.1 | PROTEIN VAV |
| CAI8050163.1 | PROTEIN VAV |
| CAI8050161.1 | PROTEIN VAV |
| CAI8050160.1 | WD40 REPEAT PROTEIN |
| CAI8050166.1 | |
| CAI8050165.1 | |
| CAI8050164.1 | |
| CAI8050167.1 | |
| CAI8050170.1 | FANCONI ANEMIA GROUP A PROTEIN |
| CAI8050169.1 | FANCONI ANEMIA GROUP A PROTEIN |
| CAI8050168.1 | FANCONI ANEMIA GROUP A PROTEIN |
