Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050271.1 | |
| CAI8050272.1 | |
| CAI8050273.1 | |
| CAI8050275.1 | |
| CAI8050274.1 | |
| CAI8050277.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8050276.1 | THYMIDYLATE SYNTHASE 1 |
| CAI8050278.1 | SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED |
| CAI8050280.1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
| CAI8050279.1 | DNA POLYMERASE THETA, PUTATIVE (AFU_ORTHOLOGUE AFUA_1G05260)-RELATED |
| CAI8050282.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| CAI8050281.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| CAI8050283.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| CAI8050284.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| CAI8050285.1 | CHROMATIN ASSEMBLY FACTOR 1 SUBUNIT B |
| CAI8050287.1 | POLYCOMB GROUP PROTEIN |
| CAI8050286.1 | |
| CAI8050288.1 | POLYCOMB GROUP PROTEIN |
| CAI8050289.1 | POLYCOMB GROUP PROTEIN |
| CAI8050290.1 | |
| CAI8050291.1 | PROTEIN PHOSPHATASE 2C |
| CAI8050294.1 | GRB10 INTERACTING GYF PROTEIN |
| CAI8050293.1 | GRB10 INTERACTING GYF PROTEIN |
| CAI8050292.1 | GRB10 INTERACTING GYF PROTEIN |
| CAI8050296.1 | GRB10 INTERACTING GYF PROTEIN |
| CAI8050295.1 | PUTATIVE-RELATED |
| CAI8050297.1 | PUTATIVE-RELATED |
| CAI8050298.1 | GRB10 INTERACTING GYF PROTEIN |
| CAI8050301.1 | D123 PROTEIN |
| CAI8050302.1 | D123 PROTEIN |
| CAI8050300.1 | D123 PROTEIN |
| CAI8050299.1 | D123 PROTEIN |
| CAI8050303.1 | |
| CAI8050304.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8050305.1 | HISTIDINE TRIAD HIT PROTEIN |
| CAI8050307.1 | UNCHARACTERIZED |
| CAI8050306.1 | |
| CAI8050308.1 | |
| CAI8050309.1 | |
| CAI8050310.1 | |
| CAI8050311.1 | |
| CAI8050312.1 | |
| CAI8050313.1 | |
| CAI8050314.1 | |
| CAI8050325.1 | INTEGRIN BETA SUBUNIT |
| CAI8050322.1 | INTEGRIN BETA SUBUNIT |
| CAI8050321.1 | INTEGRIN BETA SUBUNIT |
| CAI8050324.1 | INTEGRIN BETA SUBUNIT |
| CAI8050323.1 | INTEGRIN BETA SUBUNIT |
| CAI8050320.1 | INTEGRIN BETA SUBUNIT |
