Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050223.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050221.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050222.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050225.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050224.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050233.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050231.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050234.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050232.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050230.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050229.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050228.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI8050227.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI8050226.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI8050235.1 | LEUCYL-TRNA SYNTHETASE |
| CAI8050243.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI8050239.1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
| CAI8050244.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI8050241.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI8050245.1 | NACHT DOMAIN-CONTAINING PROTEIN |
| CAI8050242.1 | NACHT, LRR AND PYD DOMAINS-CONTAINING PROTEIN 12 |
| CAI8050240.1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
| CAI8050238.1 | |
| CAI8050237.1 | |
| CAI8050246.1 | NACHT, LRR AND CARD DOMAINS-CONTAINING |
| CAI8050236.1 | SLR5058 PROTEIN |
| CAI8050247.1 | |
| CAI8050249.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI8050248.1 | AARF DOMAIN CONTAINING KINASE 2 (PREDICTED) |
| CAI8050250.1 | ANK_REP_REGION DOMAIN-CONTAINING PROTEIN |
| CAI8050251.1 | |
| CAI8050252.1 | NEPHRIN |
| CAI8050253.1 | |
| CAI8050254.1 | |
| CAI8050255.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8050256.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8050257.1 | |
| CAI8050258.1 | |
| CAI8050259.1 | |
| CAI8050260.1 | |
| CAI8050262.1 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
| CAI8050261.1 | |
| CAI8050263.1 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
| CAI8050264.1 | TRANSLOCATION ASSOCIATED MEMBRANE PROTEIN |
| CAI8050265.1 | |
| CAI8050266.1 | |
| CAI8050267.1 | INNER MEMBRANE TRANSPORT PROTEIN YAJR |
| CAI8050268.1 | |
| CAI8050269.1 | |
| CAI8050270.1 |
