Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050571.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8050572.1 | TNF RECEPTOR ASSOCIATED FACTOR |
| CAI8050573.1 | NADH-CYTOCHROME B5 REDUCTASE |
| CAI8050576.1 | OVOCHYMASE-RELATED |
| CAI8050574.1 | OVOCHYMASE-RELATED |
| CAI8050577.1 | OVOCHYMASE-RELATED |
| CAI8050575.1 | OVOCHYMASE-RELATED |
| CAI8050578.1 | OVOCHYMASE-RELATED |
| CAI8050579.1 | UNCHARACTERIZED |
| CAI8050580.1 | UNCHARACTERIZED |
| CAI8050581.1 | |
| CAI8050582.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8050585.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8050583.1 | |
| CAI8050584.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8050586.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8050590.1 | CGI-41 METHYLTRANSFERASE |
| CAI8050589.1 | CGI-41 METHYLTRANSFERASE |
| CAI8050588.1 | CGI-41 METHYLTRANSFERASE |
| CAI8050587.1 | CGI-41 METHYLTRANSFERASE |
| CAI8050591.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050593.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050592.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8050594.1 | DYNEIN INTERMEDIATE CHAIN |
| CAI8050595.1 | RIBOSOMAL S SUBUNIT |
| CAI8050596.1 | |
| CAI8050597.1 | 3-OXO-5-ALPHA-STEROID 4-DEHYDROGENASE |
| CAI8050598.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| CAI8050599.1 | |
| CAI8050600.1 | |
| CAI8050601.1 | |
| CAI8050602.1 | UNCHARACTERIZED |
| CAI8050603.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8050604.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8050606.1 | |
| CAI8050605.1 | E3 UBIQUITIN-PROTEIN LIGASE RAD18 |
| CAI8050607.1 | RETINOBLASTOMA-BINDING PROTEIN 6 |
| CAI8050608.1 | |
| CAI8050609.1 | DIPHTHINE METHYLTRANSFERASE |
| CAI8050610.1 | |
| CAI8050613.1 | UNCHARACTERIZED |
| CAI8050612.1 | UNCHARACTERIZED |
| CAI8050611.1 | UNCHARACTERIZED |
| CAI8050614.1 | UNCHARACTERIZED |
| CAI8050615.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H |
| CAI8050616.1 | |
| CAI8050619.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI8050618.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI8050617.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
| CAI8050620.1 | AP-5 COMPLEX SUBUNIT ZETA-1 |
