Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8050771.1 | GTP CYCLOHYDROLASE I |
| CAI8050772.1 | GTP CYCLOHYDROLASE I |
| CAI8050773.1 | 7-CYANO-7-DEAZAGUANINE SYNTHASE |
| CAI8050774.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8050775.1 | HOMOSERINE/4-DIPHOSPHOCYTIDYL-2-C-METHYL-D-ERYTHRITOL KINASE |
| CAI8050776.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 7B |
| CAI8050777.1 | 5'-ADENYLYLSULFATE REDUCTASE 3, CHLOROPLASTIC |
| CAI8050778.1 | 5'-ADENYLYLSULFATE REDUCTASE 3, CHLOROPLASTIC |
| CAI8050779.1 | PTHR43509 |
| CAI8050780.1 | ENDONUCLEASE III-LIKE PROTEIN 1 |
| CAI8050781.1 | DUF521 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_6G00490) |
| CAI8050782.1 | DUF521 DOMAIN PROTEIN (AFU_ORTHOLOGUE AFUA_6G00490) |
| CAI8050783.1 | |
| CAI8050785.1 | |
| CAI8050784.1 | |
| CAI8050789.1 | AMMECR1 HOMOLOG |
| CAI8050788.1 | AMMECR1 HOMOLOG |
| CAI8050787.1 | AMMECR1 HOMOLOG |
| CAI8050786.1 | AMMECR1 HOMOLOG |
| CAI8050790.1 | |
| CAI8050791.1 | SIROHEME SYNTHASE-RELATED |
| CAI8050792.1 | COBALT-PRECORRIN-6B C(15)-METHYLTRANSFERASE (DECARBOXYLATING) |
| CAI8050793.1 | |
| CAI8050794.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8050795.1 | ENDONUCLEASE IV ENDODEOXYRIBONUCLEASE IV |
| CAI8050796.1 | DNA PRIMASE SMALL SUBUNIT |
| CAI8050797.1 | |
| CAI8050798.1 | PELOTA |
| CAI8050799.1 | |
| CAI8050800.1 | METHYLTHIORIBOSE-1-PHOSPHATE ISOMERASE |
| CAI8050801.1 | RNA 2',3'-CYCLIC PHOSPHODIESTERASE |
| CAI8050802.1 | UPF0200 PROTEIN MJ1399 |
| CAI8050803.1 | |
| CAI8050804.1 | ZINC PHOSPHODIESTERASE ELAC PROTEIN 1 |
| CAI8050805.1 | LYSINE 2,3-AMINOMUTASE-RELATED |
| CAI8050806.1 | GLUTAMINE SYNTHETASE |
| CAI8050807.1 | GLUTAMINE SYNTHETASE |
| CAI8050808.1 | GLUTAMINE SYNTHETASE |
| CAI8050809.1 | GLUTAMINE SYNTHETASE |
| CAI8050810.1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
| CAI8050811.1 | |
| CAI8050812.1 | TRANSCRIPTION INITIATION FACTOR IIB-RELATED |
| CAI8050813.1 | BLL2471 PROTEIN-RELATED |
| CAI8050814.1 | SULFATE ADENYLYLTRANSFERASE |
| CAI8050815.1 | SULFATE ADENYLYLTRANSFERASE |
| CAI8050816.1 | SULFATE ADENYLYLTRANSFERASE |
| CAI8050819.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 |
| CAI8050818.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 |
| CAI8050817.1 | DEHYDROGENASE/REDUCTASE SDR FAMILY MEMBER 11 |
| CAI8050821.1 | GLUTAMINE SYNTHETASE |
