Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051271.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8051272.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8051273.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8051274.1 | |
| CAI8051275.1 | CARBOXYMETHYLENEBUTENOLIDASE-RELATED |
| CAI8051276.1 | NHL REPEAT-CONTAINING PROTEIN 2 |
| CAI8051277.1 | 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE |
| CAI8051278.1 | HEMK METHYLTRANSFERASE |
| CAI8051279.1 | LD18447P |
| CAI8051280.1 | METHYLTRANSFERASE |
| CAI8051281.1 | |
| CAI8051282.1 | |
| CAI8051283.1 | PRENYLTRANSFERASES |
| CAI8051286.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8051285.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8051284.1 | 3-OCTAPRENYL-4-HYDROXYBENZOATE CARBOXY-LYASE-RELATED |
| CAI8051287.1 | |
| CAI8051288.1 | |
| CAI8051292.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8051290.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8051291.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8051289.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8051293.1 | SODIUM/CALCIUM EXCHANGER |
| CAI8051294.1 | |
| CAI8051295.1 | |
| CAI8051296.1 | |
| CAI8051298.1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| CAI8051297.1 | THREE PRIME REPAIR EXONUCLEASE 1, 2 |
| CAI8051299.1 | |
| CAI8051300.1 | |
| CAI8051301.1 | |
| CAI8051302.1 | |
| CAI8051303.1 | |
| CAI8051304.1 | TYROSINE-PROTEIN KINASE RECEPTOR |
| CAI8051305.1 | |
| CAI8051306.1 | |
| CAI8051308.1 | BONUS, ISOFORM C-RELATED |
| CAI8051307.1 | BONUS, ISOFORM C-RELATED |
| CAI8051309.1 | |
| CAI8051314.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051313.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051312.1 | |
| CAI8051311.1 | |
| CAI8051310.1 | |
| CAI8051315.1 | |
| CAI8051318.1 | HISTIDYL-TRNA SYNTHETASE |
| CAI8051317.1 | |
| CAI8051316.1 | |
| CAI8051319.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8051320.1 |
