Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051171.1 | LEUCINE-RICH REPEAT-CONTAINING |
| CAI8051170.1 | - |
| CAI8051173.1 | - |
| CAI8051174.1 | ARRESTIN |
| CAI8051175.1 | |
| CAI8051176.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8051177.1 | EUKARYOTIC TRANSLATION INITIATION FACTOR 3 -RELATED |
| CAI8051180.1 | |
| CAI8051179.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| CAI8051178.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| CAI8051182.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| CAI8051181.1 | PROLINE-SERINE-THREONINE PHOSPHATASE INTERACTING PROTEIN 1 |
| CAI8051183.1 | |
| CAI8051184.1 | |
| CAI8051185.1 | IFT57/HIPPI |
| CAI8051189.1 | IFT57/HIPPI |
| CAI8051187.1 | IFT57/HIPPI |
| CAI8051188.1 | IFT57/HIPPI |
| CAI8051186.1 | IFT57/HIPPI |
| CAI8051190.1 | IFT57/HIPPI |
| CAI8051191.1 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
| CAI8051192.1 | TRAF AND TNF RECEPTOR-ASSOCIATED PROTEIN |
| CAI8051193.1 | GLUTATHIONYL-HYDROQUINONE REDUCTASE |
| CAI8051196.1 | SI:DKEY-19B23.7 |
| CAI8051195.1 | SI:DKEY-19B23.7 |
| CAI8051194.1 | SI:DKEY-19B23.7 |
| CAI8051197.1 | SI:DKEY-19B23.7 |
| CAI8051198.1 | |
| CAI8051200.1 | |
| CAI8051199.1 | |
| CAI8051201.1 | |
| CAI8051202.1 | RAP GTPASE-ACTIVATING PROTEIN |
| CAI8051203.1 | |
| CAI8051204.1 | |
| CAI8051206.1 | |
| CAI8051207.1 | ANKYRIN REPEAT CONTAINING |
| CAI8051205.1 | |
| CAI8051208.1 | SUGAR HYDROLASE-RELATED |
| CAI8051209.1 | SUGAR HYDROLASE-RELATED |
| CAI8051211.1 | NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED |
| CAI8051210.1 | NUCLEAR PORE MEMBRANE GLYCOPROTEIN GP210-RELATED |
| CAI8051212.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8051213.1 | E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATED |
| CAI8051214.1 | |
| CAI8051215.1 | |
| CAI8051216.1 | |
| CAI8051217.1 | ARMADILLO SEGMENT POLARITY PROTEIN |
| CAI8051218.1 | ARMADILLO SEGMENT POLARITY PROTEIN |
| CAI8051219.1 | ARMADILLO SEGMENT POLARITY PROTEIN |
| CAI8051220.1 |
