Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051472.1 | |
| CAI8051471.1 | |
| CAI8051473.1 | |
| CAI8051474.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8051475.1 | CYTOKINE RECEPTOR |
| CAI8051476.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8051477.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8051478.1 | D-GLUTAMATE CYCLASE, MITOCHONDRIAL |
| CAI8051479.1 | RIBONUCLEASE VAPC3 |
| CAI8051480.1 | |
| CAI8051481.1 | CELL SURFACE PROTEIN |
| CAI8051483.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8051482.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8051485.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8051484.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8051486.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8051487.1 | E3 UBIQUITIN-PROTEIN LIGASE MIB2 |
| CAI8051488.1 | |
| CAI8051489.1 | |
| CAI8051490.1 | |
| CAI8051493.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8051492.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8051491.1 | |
| CAI8051494.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8051495.1 | MUCOSA ASSOCIATED LYMPHOID TISSUE LYMPHOMA TRANSLOCATION PROTEIN 1/PARACASPASE |
| CAI8051496.1 | |
| CAI8051497.1 | FATTY ACID DESATURASE 2 |
| CAI8051499.1 | |
| CAI8051498.1 | FATTY ACID DESATURASE 2 |
| CAI8051500.1 | CENTROCORTIN FAMILY MEMBER |
| CAI8051501.1 | VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 5A |
| CAI8051502.1 | |
| CAI8051504.1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
| CAI8051503.1 | RNA AND EXPORT FACTOR BINDING PROTEIN |
| CAI8051505.1 | TRINUCLEOTIDE REPEAT-CONTAINING GENE 6 |
| CAI8051506.1 | |
| CAI8051509.1 | |
| CAI8051508.1 | |
| CAI8051507.1 | |
| CAI8051510.1 | |
| CAI8051511.1 | |
| CAI8051512.1 | |
| CAI8051515.1 | |
| CAI8051514.1 | |
| CAI8051513.1 | |
| CAI8051516.1 | |
| CAI8051517.1 | |
| CAI8051518.1 | TRNA 5-METHYLAMINOMETHYL-2-THIOURIDYLATE -METHYLTRANSFERASE |
| CAI8051519.1 | RIBONUCLEASE H2 SUBUNIT A |
| CAI8051524.1 | 3-ISOPROPYLMALATE DEHYDROGENASE |
