Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051621.1 | FAD-BINDING, PUTATIVE (AFU_ORTHOLOGUE AFUA_6G07600)-RELATED |
| CAI8051622.1 | COMPONENT OF ATP-DEPENDENT DSDNA EXONUCLEASE |
| CAI8051623.1 | |
| CAI8051624.1 | ALKANESULFONATE MONOOXYGENASE |
| CAI8051625.1 | HYDROLASE, ALPHA/BETA FOLD FAMILY PROTEIN |
| CAI8051626.1 | DEHYDROGENASES, SHORT CHAIN |
| CAI8051627.1 | MONOCARBOXYLATE TRANSPORTER |
| CAI8051628.1 | XYLOGLUCANASE (EUROFUNG) |
| CAI8051629.1 | |
| CAI8051630.1 | |
| CAI8051631.1 | DNA METHYLTRANSFERASE YEEA-RELATED |
| CAI8051632.1 | GLUCOSE-METHANOL-CHOLINE GMC OXIDOREDUCTASE |
| CAI8051633.1 | TRANS-SULFURATION ENZYME FAMILY MEMBER |
| CAI8051634.1 | CELL SURFACE PROTEIN |
| CAI8051635.1 | PERIPLASMIC BINDING COMPONENT OF ABC TRANSPORTER |
| CAI8051636.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8051637.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8051638.1 | DIPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN DPPB-RELATED |
| CAI8051639.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8051640.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8051641.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8051642.1 | |
| CAI8051643.1 | |
| CAI8051644.1 | |
| CAI8051645.1 | |
| CAI8051646.1 | |
| CAI8051647.1 | |
| CAI8051648.1 | |
| CAI8051649.1 | |
| CAI8051650.1 | |
| CAI8051651.1 | |
| CAI8051652.1 | |
| CAI8051653.1 | |
| CAI8051654.1 | |
| CAI8051656.1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8051655.1 | IGGFC_BINDING DOMAIN-CONTAINING PROTEIN |
| CAI8051657.1 | |
| CAI8051658.1 | |
| CAI8051659.1 | |
| CAI8051660.1 | |
| CAI8051661.1 | PULMONARY SURFACTANT-ASSOCIATED PROTEIN A |
| CAI8051664.1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| CAI8051663.1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| CAI8051662.1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| CAI8051666.1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| CAI8051665.1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| CAI8051667.1 | RHO GTPASE ACTIVATING PROTEIN AT 15B, ISOFORM C |
| CAI8051669.1 | |
| CAI8051670.1 | |
| CAI8051668.1 |
