Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8051721.1 | PHOSPHOGLYCERATE KINASE |
| CAI8051724.1 | CERAMIDASE |
| CAI8051723.1 | CERAMIDASE |
| CAI8051722.1 | CERAMIDASE |
| CAI8051725.1 | CERAMIDASE |
| CAI8051726.1 | CERAMIDASE |
| CAI8051727.1 | CERAMIDASE |
| CAI8051728.1 | SI:DKEY-19B23.12-RELATED |
| CAI8051731.1 | SI:DKEY-19B23.12-RELATED |
| CAI8051730.1 | SI:DKEY-19B23.12-RELATED |
| CAI8051729.1 | |
| CAI8051732.1 | SI:DKEY-19B23.12-RELATED |
| CAI8051733.1 | SI:DKEY-19B23.12-RELATED |
| CAI8051734.1 | |
| CAI8051735.1 | |
| CAI8051736.1 | |
| CAI8051737.1 | |
| CAI8051738.1 | |
| CAI8051739.1 | |
| CAI8051740.1 | |
| CAI8051741.1 | |
| CAI8051742.1 | |
| CAI8051743.1 | |
| CAI8051744.1 | COPROPORPHYRINOGEN III OXIDASE, MITOCHONDRIAL |
| CAI8051745.1 | |
| CAI8051746.1 | |
| CAI8051747.1 | |
| CAI8051748.1 | DYNEIN HEAVY CHAIN |
| CAI8051749.1 | DYNEIN HEAVY CHAIN |
| CAI8051750.1 | |
| CAI8051754.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8051753.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8051751.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8051752.1 | AP-5 COMPLEX SUBUNIT BETA-1 |
| CAI8051755.1 | |
| CAI8051756.1 | |
| CAI8051757.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8051758.1 | ALLANTOATE DEIMINASE-RELATED |
| CAI8051759.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8051760.1 | TRANSCRIPTIONAL REGULATOR, ASNC FAMILY |
| CAI8051761.1 | SIROHEME BIOSYNTHESIS PROTEIN MET8 |
| CAI8051762.1 | PORPHOBILINOGEN DEAMINASE |
| CAI8051763.1 | SIROHEME SYNTHASE-RELATED |
| CAI8051764.1 | DELTA-AMINOLEVULINIC ACID DEHYDRATASE |
| CAI8051765.1 | GLUTAMATE-1-SEMIALDEHYDE 2,1-AMINOMUTASE |
| CAI8051766.1 | ANKYRIN REPEAT AND PROTEIN KINASE DOMAIN-CONTAINING PROTEIN |
| CAI8051767.1 | |
| CAI8051768.1 | MAP/MICROTUBULE AFFINITY-REGULATING KINASE |
| CAI8051770.1 | SENTRIN-SPECIFIC PROTEASE |
| CAI8051769.1 |
