Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053169.1 | UVRC/OXIDOREDUCTASE |
| CAI8053170.1 | UVRC/OXIDOREDUCTASE |
| CAI8053168.1 | UVRC/OXIDOREDUCTASE |
| CAI8053167.1 | UVRC/OXIDOREDUCTASE |
| CAI8053166.1 | UVRC/OXIDOREDUCTASE |
| CAI8053176.1 | |
| CAI8053177.1 | |
| CAI8053178.1 | |
| CAI8053179.1 | |
| CAI8053181.1 | |
| CAI8053180.1 | |
| CAI8053182.1 | ADENOSINE/GUANOSINE DIPHOSPHATASE |
| CAI8053183.1 | PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5 |
| CAI8053184.1 | |
| CAI8053185.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8053186.1 | ATP-DEPENDENT RNA HELICASE |
| CAI8053190.1 | ANKYRIN REPEAT CONTAINING |
| CAI8053189.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8053191.1 | ANKYRIN REPEAT, SAM AND BASIC LEUCINE ZIPPER DOMAIN-CONTAINING PROTEIN 1 |
| CAI8053192.1 | MOLTING PROTEIN MLT-4 |
| CAI8053187.1 | |
| CAI8053188.1 | |
| CAI8053193.1 | |
| CAI8053194.1 | |
| CAI8053195.1 | |
| CAI8053196.1 | |
| CAI8053197.1 | EPH RECEPTOR A5 |
| CAI8053198.1 | EPH RECEPTOR A5 |
| CAI8053202.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053201.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053203.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053204.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053200.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053199.1 | |
| CAI8053205.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053206.1 | TATA ELEMENT MODULATORY FACTOR TMF1 |
| CAI8053207.1 | TATA ELEMENT MODULATORY FACTOR TMF1 |
| CAI8053208.1 | TATA ELEMENT MODULATORY FACTOR TMF1 |
| CAI8053209.1 | ATP SYNTHASE SUBUNIT D, MITOCHONDRIAL |
| CAI8053211.1 | |
| CAI8053210.1 | |
| CAI8053212.1 | RNA-BINDING PROTEIN LUC7-RELATED |
| CAI8053213.1 | |
| CAI8053214.1 | MADF DOMAIN TRANSCRIPTION FACTOR |
| CAI8053217.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8053216.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8053215.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8053218.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8053219.1 | BACTERICIDAL PERMEABILITY-INCREASING BPI PROTEIN-RELATED |
| CAI8053220.1 | RALA BINDING PROTEIN 1 RALBP1 |
