Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053320.1 | ENOLASE |
| CAI8053319.1 | ENOLASE |
| CAI8053323.1 | ENOLASE |
| CAI8053324.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8053325.1 | 3-OXOACYL-(ACYL-CARRIER-PROTEIN) REDUCTASE |
| CAI8053326.1 | |
| CAI8053327.1 | |
| CAI8053328.1 | |
| CAI8053329.1 | |
| CAI8053330.1 | GFA DOMAIN-CONTAINING PROTEIN |
| CAI8053331.1 | AMINOPEPTIDASE |
| CAI8053332.1 | FUCULOSE PHOSPHATE ALDOLASE |
| CAI8053333.1 | NUCLEOTIDE KINASE |
| CAI8053334.1 | 50S RIBOSOMAL PROTEIN L15 |
| CAI8053335.1 | MITOCHONDRIAL RIBOSOMAL PROTEIN S5 |
| CAI8053336.1 | 39S RIBOSOMAL PROTEIN L18, MITOCHONDRIAL |
| CAI8053338.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8053337.1 | 60S/50S RIBOSOMAL PROTEIN L6/L9 |
| CAI8053339.1 | 30S RIBOSOMAL PROTEIN S14 |
| CAI8053340.1 | 60S RIBOSOMAL PROTEIN L11-RELATED |
| CAI8053341.1 | 50S/60S RIBOSOMAL PROTEIN L16 |
| CAI8053342.1 | 30S/40S RIBOSOMAL PROTEIN S3 |
| CAI8053343.1 | RIBOSOMAL PROTEIN S19P FAMILY MEMBER |
| CAI8053344.1 | RIBOSOMAL PROTEIN L2 |
| CAI8053345.1 | 50S RIBOSOMAL PROTEIN L3 |
| CAI8053346.1 | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER |
| CAI8053347.1 | ELONGATION FACTOR TU-RELATED |
| CAI8053348.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8053349.1 | RIBOSOMAL PROTEIN S7 |
| CAI8053350.1 | 30S RIBOSOMAL PROTEIN S12 FAMILY MEMBER |
| CAI8053351.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8053354.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8053352.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8053353.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8053355.1 | PHOSPHORIBOSYLAMINE--GLYCINE LIGASE |
| CAI8053356.1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 |
| CAI8053357.1 | ARGININE-TRNA-PROTEIN TRANSFERASE 1 |
| CAI8053358.1 | - |
| CAI8053359.1 | ADENOSYLMETHIONINE-8-AMINO-7-OXONONANOATE AMINOTRANSFERASE |
| CAI8053360.1 | BIOTIN SYNTHASE |
| CAI8053361.1 | |
| CAI8053362.1 | - |
| CAI8053363.1 | - |
| CAI8053364.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8053365.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8053366.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8053367.1 | 5-OXOPROLINASE RELATED |
| CAI8053368.1 | 5-OXOPROLINASE RELATED |
| CAI8053369.1 | 5-OXOPROLINASE RELATED |
| CAI8053370.1 | FMN-LINKED OXIDOREDUCTASES SUPERFAMILY PROTEIN |
