Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053421.1 | NUCLEOLAR RNA-ASSOCIATED PROTEIN |
| CAI8053422.1 | TETRATRICOPEPTIDE REPEAT PROTEIN 24 |
| CAI8053423.1 | TUBULIN-SPECIFIC CHAPERONE A |
| CAI8053425.1 | G PATCH DOMAIN CONTAINING PROTEIN |
| CAI8053424.1 | |
| CAI8053426.1 | TANDEM PH DOMAIN CONTAINING PROTEIN |
| CAI8053427.1 | |
| CAI8053428.1 | |
| CAI8053429.1 | |
| CAI8053432.1 | SI:CH211-189E2.2 |
| CAI8053434.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED |
| CAI8053433.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 31-RELATED |
| CAI8053431.1 | MASK PROTEIN |
| CAI8053430.1 | ANKYRIN REPEAT CONTAINING |
| CAI8053435.1 | MASK PROTEIN |
| CAI8053437.1 | SI:CH211-189E2.2 |
| CAI8053436.1 | MASK PROTEIN |
| CAI8053440.1 | MASK PROTEIN |
| CAI8053441.1 | ANKYRIN REPEAT CONTAINING |
| CAI8053442.1 | ANKYRIN REPEAT CONTAINING |
| CAI8053443.1 | ROLLING PEBBLES, ISOFORM B |
| CAI8053444.1 | ANKYRIN REPEAT CONTAINING |
| CAI8053438.1 | ANKYRIN REPEAT-CONTAINING |
| CAI8053445.1 | MASK PROTEIN |
| CAI8053439.1 | |
| CAI8053452.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8053451.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8053450.1 | |
| CAI8053449.1 | |
| CAI8053448.1 | |
| CAI8053447.1 | |
| CAI8053446.1 | |
| CAI8053455.1 | |
| CAI8053454.1 | MANNOSE-6-PHOSPHATE RECEPTOR FAMILY MEMBER |
| CAI8053453.1 | |
| CAI8053456.1 | WD REPEAT DOMAIN-CONTAINING FAMILY |
| CAI8053458.1 | |
| CAI8053457.1 | FANCONI ANEMIA CORE COMPLEX-ASSOCIATED PROTEIN 100 |
| CAI8053459.1 | |
| CAI8053460.1 | |
| CAI8053465.1 | ANKYRIN REPEAT PROTEIN |
| CAI8053464.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8053463.1 | CYCLIN-DEPENDENT KINASE INHIBITOR 2C-RELATED |
| CAI8053462.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8053461.1 | ANKYRIN REPEAT DOMAIN-CONTAINING PROTEIN 39-RELATED |
| CAI8053466.1 | |
| CAI8053468.1 | |
| CAI8053467.1 | |
| CAI8053469.1 | |
| CAI8053470.1 | HISTONE H2A |
