Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053521.1 | |
| CAI8053522.1 | |
| CAI8053523.1 | ACYL-COA SYNTHETASE |
| CAI8053524.1 | ACYL-COA SYNTHETASE |
| CAI8053525.1 | ALCOHOL DEHYDROGENASE |
| CAI8053527.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8053526.1 | NAD-DEPENDENT PROTEIN DEACYLASE SIRTUIN-5, MITOCHONDRIAL-RELATED |
| CAI8053528.1 | DNA REPLICATION AND REPAIR PROTEIN RECF |
| CAI8053529.1 | |
| CAI8053530.1 | ZINC UPTAKE REGULATION PROTEIN |
| CAI8053531.1 | CYTOPLASMIC PROTEIN-RELATED |
| CAI8053532.1 | RIBD C-TERMINAL DOMAIN CONTAINING PROTEIN |
| CAI8053533.1 | |
| CAI8053534.1 | LIPOPROTEIN-RELATED |
| CAI8053535.1 | DNA DAMAGE-REPAIR/TOLERATION PROTEIN DRT100 |
| CAI8053536.1 | FIBRILLIN-RELATED |
| CAI8053537.1 | |
| CAI8053538.1 | |
| CAI8053539.1 | |
| CAI8053540.1 | |
| CAI8053541.1 | |
| CAI8053543.1 | |
| CAI8053542.1 | |
| CAI8053544.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8053545.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8053546.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8053547.1 | LIPOPOLYSACCHARIDE-INDUCED TUMOR NECROSIS FACTOR-ALPHA FACTOR |
| CAI8053548.1 | |
| CAI8053550.1 | |
| CAI8053549.1 | |
| CAI8053551.1 | |
| CAI8053552.1 | |
| CAI8053553.1 | ARYLSULFATASE FAMILY MEMBER |
| CAI8053554.1 | |
| CAI8053555.1 | |
| CAI8053556.1 | |
| CAI8053557.1 | |
| CAI8053558.1 | GTP-BINDING PROTEIN-RELATED |
| CAI8053559.1 | GTP-BINDING PROTEIN-RELATED |
| CAI8053560.1 | |
| CAI8053561.1 | SUGAR-1-PHOSPHATE GUANYL TRANSFERASE |
| CAI8053562.1 | PROTEIN SIDEKICK |
| CAI8053563.1 | PROTEIN SIDEKICK |
| CAI8053564.1 | |
| CAI8053567.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8053566.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8053565.1 | RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE |
| CAI8053569.1 | UBIQUITIN-PROTEIN LIGASE E3C |
| CAI8053568.1 | UBIQUITIN-PROTEIN LIGASE E3C |
| CAI8053570.1 |
