Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053471.1 | GUANINE NUCLEOTIDE EXCHANGE FACTOR |
| CAI8053472.1 | HISTONE H2B |
| CAI8053473.1 | HISTONE H2B |
| CAI8053476.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8053475.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8053474.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8053478.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8053477.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8053479.1 | GENERAL TRANSCRIPTION FACTOR IIH SUBUNIT 2 |
| CAI8053480.1 | |
| CAI8053481.1 | EGF-LIKE DOMAIN-CONTAINING PROTEIN |
| CAI8053482.1 | EF-HAND DOMAIN-CONTAINING PROTEIN D |
| CAI8053483.1 | RAP GTPASE-ACTIVATING PROTEIN |
| CAI8053484.1 | |
| CAI8053485.1 | |
| CAI8053486.1 | |
| CAI8053487.1 | |
| CAI8053488.1 | |
| CAI8053489.1 | |
| CAI8053490.1 | |
| CAI8053491.1 | |
| CAI8053492.1 | |
| CAI8053493.1 | |
| CAI8053494.1 | |
| CAI8053495.1 | |
| CAI8053499.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053498.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053497.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053496.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053500.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053501.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053502.1 | BIFUNCTIONAL 3'-PHOSPHOADENOSINE 5'-PHOSPHOSULFATE SYNTHASE |
| CAI8053503.1 | |
| CAI8053504.1 | TIM23 |
| CAI8053508.1 | ALCOHOL DEHYDROGENASE |
| CAI8053507.1 | ALCOHOL DEHYDROGENASE |
| CAI8053506.1 | |
| CAI8053505.1 | |
| CAI8053509.1 | ALCOHOL DEHYDROGENASE |
| CAI8053510.1 | DOUBLE-STRAND BREAK REPAIR PROTEIN MRE11 |
| CAI8053513.1 | CBL |
| CAI8053512.1 | CBL |
| CAI8053511.1 | CBL |
| CAI8053514.1 | |
| CAI8053515.1 | CONSERVED OLIGOMERIC GOLGI COMPLEX COMPONENT 8 |
| CAI8053516.1 | |
| CAI8053517.1 | |
| CAI8053518.1 | |
| CAI8053519.1 | NUCLEOSIDE TRIPHOSPHATE PYROPHOSPHOHYDROLASE |
| CAI8053520.1 | MALATE SYNTHASE |
