Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053623.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053620.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053619.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053618.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053617.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053626.1 | ATP-BINDING CASSETTE TRANSPORTER SUBFAMILY A ABCA |
| CAI8053627.1 | - |
| CAI8053628.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8053629.1 | KELCH PROTEIN |
| CAI8053630.1 | KELCH PROTEIN |
| CAI8053631.1 | KELCH PROTEIN |
| CAI8053632.1 | KELCH REPEAT AND BTB DOMAIN-CONTAINING PROTEIN 13-RELATED |
| CAI8053634.1 | |
| CAI8053633.1 | |
| CAI8053635.1 | |
| CAI8053636.1 | |
| CAI8053637.1 | |
| CAI8053638.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8053639.1 | SCY1-RELATED S/T PROTEIN KINASE-LIKE |
| CAI8053643.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| CAI8053642.1 | HYPOXIA-INDUCIBLE FACTOR 1 ALPHA INHIBITOR-RELATED |
| CAI8053641.1 | |
| CAI8053640.1 | |
| CAI8053644.1 | ABC TRANSPORTER G FAMILY MEMBER 28 |
| CAI8053645.1 | LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED |
| CAI8053646.1 | |
| CAI8053647.1 | UV EXCISION REPAIR PROTEIN RAD23 |
| CAI8053648.1 | |
| CAI8053649.1 | |
| CAI8053650.1 | |
| CAI8053651.1 | |
| CAI8053652.1 | |
| CAI8053656.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8053655.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8053654.1 | RHO GTPASE-ACTIVATING PROTEIN 68F |
| CAI8053653.1 | |
| CAI8053657.1 | CORTISTATIN |
| CAI8053662.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8053663.1 | |
| CAI8053660.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8053659.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8053658.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8053664.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8053665.1 | |
| CAI8053661.1 | SPECKLE-TYPE POZ PROTEIN |
| CAI8053667.1 | |
| CAI8053666.1 | |
| CAI8053668.1 | |
| CAI8053669.1 | |
| CAI8053670.1 |
