Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053718.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053723.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053722.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053725.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053724.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053726.1 | HEAT SHOCK PROTEIN 70KDA |
| CAI8053729.1 | |
| CAI8053728.1 | |
| CAI8053727.1 | |
| CAI8053731.1 | PROHIBITIN |
| CAI8053730.1 | PROHIBITIN |
| CAI8053732.1 | PROHIBITIN |
| CAI8053735.1 | COATOMER |
| CAI8053734.1 | COATOMER |
| CAI8053733.1 | COATOMER |
| CAI8053736.1 | COATOMER |
| CAI8053739.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053740.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053741.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053738.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053737.1 | F13M7.16 PROTEIN |
| CAI8053742.1 | UBIQUITIN CARBOXYL-TERMINAL HYDROLASE |
| CAI8053743.1 | |
| CAI8053744.1 | |
| CAI8053745.1 | |
| CAI8053746.1 | |
| CAI8053747.1 | |
| CAI8053748.1 | |
| CAI8053753.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053751.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053752.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053750.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053749.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053754.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053755.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053756.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053757.1 | DNA REPAIR/RNA PROCESSING CPSF FAMILY |
| CAI8053759.1 | GLYCOSYLTRANSFERASE |
| CAI8053758.1 | |
| CAI8053760.1 | |
| CAI8053761.1 | |
| CAI8053762.1 | |
| CAI8053763.1 | |
| CAI8053764.1 | GLYCOSYLTRANSFERASE |
| CAI8053765.1 | GLYCOSYLTRANSFERASE |
| CAI8053766.1 | THIOREDOXIN-LIKE PROTEN 4A, 4B |
| CAI8053767.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8053768.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8053769.1 | FLAP ENDONUCLEASE FAMILY MEMBER |
| CAI8053770.1 | RNA POLYMERASE SIGMA FACTOR RPO |
