Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053872.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI8053870.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI8053873.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI8053874.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI8053875.1 | PLECKSTRIN HOMOLOGY DOMAIN CONTAINING PROTEIN |
| CAI8053878.1 | |
| CAI8053877.1 | |
| CAI8053876.1 | |
| CAI8053879.1 | |
| CAI8053880.1 | METHYLENETETRAHYDROFOLATE REDUCTASE |
| CAI8053881.1 | L-RHAMNOSE ISOMERASE |
| CAI8053882.1 | TRANSLATION ELONGATION FACTOR G-RELATED |
| CAI8053883.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8053884.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8053885.1 | CROSSOVER JUNCTION ENDODEOXYRIBONUCLEASE RUVC |
| CAI8053886.1 | |
| CAI8053887.1 | THIOL PEROXIDASE |
| CAI8053888.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8053889.1 | GLYCYL-TRNA SYNTHETASE/DNA POLYMERASE SUBUNIT GAMMA-2 |
| CAI8053890.1 | PROPIONYL-COA CARBOXYLASE BETA CHAIN |
| CAI8053891.1 | OXALOACETATE DECARBOXYLASE ALPHA CHAIN |
| CAI8053892.1 | L-2-HYDROXYCARBOXYLATE DEHYDROGENASE (NAD(P)(+)) |
| CAI8053893.1 | COB--COM HETERODISULFIDE REDUCTASE SUBUNIT B 1 |
| CAI8053894.1 | SUCCINATE DEHYDROGENASE IRON-SULFUR PROTEIN |
| CAI8053895.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI8053896.1 | SUCCINATE DEHYDROGENASE 2 FLAVOPROTEIN SUBUNIT |
| CAI8053898.1 | LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 |
| CAI8053897.1 | POLYGALACTURONASE INHIBITOR 1 |
| CAI8053899.1 | |
| CAI8053900.1 | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 |
| CAI8053901.1 | HIGH-AFFINITY BRANCHED-CHAIN AMINO ACID TRANSPORT ATP-BINDING PROTEIN LIVF |
| CAI8053902.1 | CONSERVED COMPONENT OF ABC TRANSPORTER FOR NATURAL AMINO ACIDS-RELATED |
| CAI8053903.1 | 1-D-DEOXYXYLULOSE 5-PHOSPHATE SYNTHASE-RELATED |
| CAI8053904.1 | EFFLUX SYSTEM COMPONENT YKNX-RELATED |
| CAI8053905.1 | UNCHARACTERIZED PROTEIN YBGL-RELATED |
| CAI8053906.1 | UNCHARACTERIZED PROTEIN YBGL-RELATED |
| CAI8053907.1 | UNCHARACTERIZED PROTEIN YBGL-RELATED |
| CAI8053908.1 | 5-OXOPROLINASE SUBUNIT B |
| CAI8053909.1 | 5-OXOPROLINASE SUBUNIT B |
| CAI8053910.1 | 5-OXOPROLINASE SUBUNIT C |
| CAI8053911.1 | SULFITE REDUCTASE |
| CAI8053912.1 | AMINOTRANSFERASE |
| CAI8053913.1 | |
| CAI8053914.1 | NIPSNAP-RELATED |
| CAI8053915.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8053916.1 | SUCCINATE--HYDROXYMETHYLGLUTARATE COA-TRANSFERASE |
| CAI8053917.1 | SULFOPYRUVATE DECARBOXYLASE SUBUNIT ALPHA |
| CAI8053918.1 | |
| CAI8053919.1 | HYDROXYACYLGLUTATHIONE HYDROLASE GLOC |
| CAI8053920.1 | TRYPTOPHAN SYNTHASE, ALPHA CHAIN |
