Geodia barretti is a species of deep-sea sponge in the family Geodiidae, commonly found in cold-water ecosystems of the North Atlantic Ocean. This species thrives in nutrient-rich, cold-water environments and plays a crucial role in deep-sea ecosystems by filtering large volumes of water, contributing to nutrient cycling, and providing habitat for various marine organisms. Its unique adaptations to cold and high-pressure conditions make it an important subject for studying deep-sea biodiversity and ecological processes.
| Species | Phylum | Common Name | Ecosystem | Depth | Habitat | NCBI Taxonomy ID |
|---|---|---|---|---|---|---|
| Geodia barretti | Porifera | deep-sea sponge | Deep sea | 30-2000 | Kosterfjord National Park, Sweden, West of Yttre Vattenholmen (58.876233, 11.101483) | 519541 |
| Genome Assembly | Genome Size | Assembly level | Released year | WGS accession | Submitter | BioProject | BUSCO completeness | Gene Number |
|---|---|---|---|---|---|---|---|---|
| Geodia_barretti_n_2022_12 | 144.8Mb | Scaffold | 2024 | CASHTH01 | pharmaceutical biosciences, uppsala university | PRJEB58046 | 71.50% | 31,884 |
| Title | Journal | Pubmed ID |
|---|---|---|
| Whole genome sequence of the deep-sea sponge Geodia barretti (Metazoa, Porifera, Demospongiae) | G3 (Bethesda) | 37619978 |
| Gene ID | Description |
|---|---|
| CAI8053921.1 | CHORISMATE MUTASE |
| CAI8053922.1 | FOSMIDOMYCIN RESISTANCE PROTEIN |
| CAI8053923.1 | RIBOFLAVIN KINASE/FMN ADENYLYLTRANSFERASE |
| CAI8053924.1 | PHYTOCHROME-LIKE PROTEIN CPH1 |
| CAI8053925.1 | RESPONSE REGULATOR RCP1-RELATED |
| CAI8053928.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8053926.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8053927.1 | TYROSYL-TRNA SYNTHETASE |
| CAI8053929.1 | OLIGOPEPTIDE TRANSPORT SYSTEM PERMEASE PROTEIN APPC |
| CAI8053930.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8053931.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8053932.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8053933.1 | PYRIDOXAL 5'-PHOSPHATE SYNTHASE SUBUNIT SNZ1-RELATED |
| CAI8053934.1 | |
| CAI8053935.1 | ELONGATION FACTOR TU-RELATED |
| CAI8053936.1 | |
| CAI8053937.1 | |
| CAI8053938.1 | UNCHARACTERIZED |
| CAI8053939.1 | ENOLASE SUPERFAMILY, MANDELATE RACEMASE |
| CAI8053940.1 | |
| CAI8053941.1 | |
| CAI8053943.1 | |
| CAI8053942.1 | |
| CAI8053944.1 | |
| CAI8053945.1 | ANKYRIN REPEAT-CONTAINING |
| CAI8053947.1 | MOLTING PROTEIN MLT-4 |
| CAI8053946.1 | ANKYRIN DOMAIN-CONTAINING |
| CAI8053948.1 | MOLTING PROTEIN MLT-4 |
| CAI8053949.1 | COILED-COIL DOMAIN-CONTAINING PROTEIN 189 |
| CAI8053951.1 | |
| CAI8053950.1 | |
| CAI8053952.1 | |
| CAI8053953.1 | |
| CAI8053965.1 | PROTEIN CBR-CLEC-78 |
| CAI8053961.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053966.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053962.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053963.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053957.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053964.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053958.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053960.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053959.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053956.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053955.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053954.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053967.1 | COMPLEMENT COMPONENT-RELATED SUSHI DOMAIN-CONTAINING |
| CAI8053968.1 | |
| CAI8053970.1 | |
| CAI8053969.1 |
